Effective results for Desulfonatronospira thiodismutans ASO3-1 (eggnog40)

Summary

Number of putative secreted proteins: 207
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 37 eukaryotic-like domains, contained in 207 proteins (52 high, 155 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
555779.Dthio_PD1070(PF01627) (PF08448)ER
555779.Dthio_PD0610(PF01627) (PF08448)ER; (ER)
555779.Dthio_PD0972(PF13188) (PF08448)mitochondrial
555779.Dthio_PD2132(PF04998) (PF04565) (PF00623) (PF00562)
555779.Dthio_PD1857(PF01627) (PF08448)ER
555779.Dthio_PD1635(PF01627) (PF08448)ER
555779.Dthio_PD3179(PF01627) (PF08448)ER
555779.Dthio_PD3160(PF00589) PF02899(ER)
555779.Dthio_PD1402(PF08448)mitochondrial
555779.Dthio_PD3646(PF00589)(mitochondrial)
555779.Dthio_PD2301(PF00438) (PF02773) (PF02772)
555779.Dthio_PD3499PF11074(mitochondrial)
555779.Dthio_PD0475(PF01936)(mitochondrial)
555779.Dthio_PD1355(PF03567)mitochondrial
555779.Dthio_PD0639(PF00438) (PF02773) (PF02772)
555779.Dthio_PD1699PF13173(mitochondrial)
555779.Dthio_PD3195PF13173mitochondrial
555779.Dthio_PD1576(PF03567)mitochondrial
555779.Dthio_PD1575(PF03567)(mitochondrial); (plastid)
555779.Dthio_PD2053(PF00438) (PF02773) (PF02772)
555779.Dthio_PD2727(PF02958)(ER)
555779.Dthio_PD0102PF13173(ER)
555779.Dthio_PD1361(PF03567)(mitochondrial)
555779.Dthio_PD2926(PF08448)ER
555779.Dthio_PD3543PF11074(mitochondrial)
555779.Dthio_PD1169PF13173mitochondrial
555779.Dthio_PD1549(PF01936)(mitochondrial)
555779.Dthio_PD3346(PF01627)(mitochondrial)
555779.Dthio_PD1021(PF13187)(mitochondrial)
555779.Dthio_PD1527(PF01936)(mitochondrial)
555779.Dthio_PD1990(PF10143)ER
555779.Dthio_PD3824PF13173(mitochondrial)
555779.Dthio_PD1465(PF13188)ER
555779.Dthio_PD1688(PF07927)(mitochondrial)
555779.Dthio_PD3349PF13173ER
555779.Dthio_PD2582PF13173mitochondrial; (mitochondrial)
555779.Dthio_PD1058(PF13188)(mitochondrial)
555779.Dthio_PD2974(PF08448)ER
555779.Dthio_PD2991(PF01936)mitochondrial; (mitochondrial)
555779.Dthio_PD0042(PF00589) PF02899
555779.Dthio_PD3807(PF13188) (PF08448)
555779.Dthio_PD3802(PF13188) (PF01627)
555779.Dthio_PD0453(PF00589) PF02899
555779.Dthio_PD0452PF01807(mitochondrial)
555779.Dthio_PD0455(PF00589) PF02899
555779.Dthio_PD1073(PF01627) (PF08448)
555779.Dthio_PD2203(PF01695)(mitochondrial)
555779.Dthio_PD0472(PF07927)(mitochondrial)
555779.Dthio_PD0484PF01807(mitochondrial)
555779.Dthio_PD3063(PF03266)(mitochondrial)
555779.Dthio_PD0080(PF00589) PF02899
555779.Dthio_PD0083PF01807(mitochondrial)
555779.Dthio_PD3472(PF01627) (PF08448)
555779.Dthio_PD3196(PF07927)(mitochondrial)
555779.Dthio_PD0333(PF04998) (PF00623)
555779.Dthio_PD0334(PF04565) (PF00562)
555779.Dthio_PD1375(PF13188) (PF08448)
555779.Dthio_PD0091PF01807(mitochondrial)
555779.Dthio_PD0090(PF00589) PF02899
555779.Dthio_PD2278(PF13188) (PF08448)
555779.Dthio_PD0982(PF13188) (PF08448)
555779.Dthio_PD3010(PF00589) PF02899
555779.Dthio_PD0291(PF01627) (PF08448)
555779.Dthio_PD2859PF13173(mitochondrial)
555779.Dthio_PD2143(PF01695)(mitochondrial)
555779.Dthio_PD0165(PF01695)(mitochondrial)
555779.Dthio_PD1547(PF01695)(mitochondrial)
555779.Dthio_PD0178(PF07927)(mitochondrial)
555779.Dthio_PD3576(PF08448)(ER)
555779.Dthio_PD0002PF01807(mitochondrial)
555779.Dthio_PD1537PF01807(mitochondrial)
555779.Dthio_PD1536(PF00589) PF02899
555779.Dthio_PD1534(PF00589) PF02899
555779.Dthio_PD1530(PF07927)(mitochondrial)
555779.Dthio_PD2895(PF00589) PF02899
555779.Dthio_PD2898(PF01627) (PF08448)
555779.Dthio_PD1858(PF13188) (PF01627)
555779.Dthio_PD3368PF13173(mitochondrial)
555779.Dthio_PD3355(PF01627) (PF08448)
555779.Dthio_PD0485(PF00589) PF02899
555779.Dthio_PD0487(PF00589) PF02899
555779.Dthio_PD0557(PF00589) PF02899
555779.Dthio_PD2745(PF13188) (PF08448)
555779.Dthio_PD3021(PF13187)
555779.Dthio_PD1887(PF03050)
555779.Dthio_PD0132(PF08843)
555779.Dthio_PD0041(PF00589)
555779.Dthio_PD1067(PF01627)
555779.Dthio_PD1664(PF01627)
555779.Dthio_PD3803(PF08448)
555779.Dthio_PD2509(PF01627)
555779.Dthio_PD1081(PF01627)
555779.Dthio_PD0010(PF00589)
555779.Dthio_PD3748(PF08448)
555779.Dthio_PD0454(PF00589)
555779.Dthio_PD0699PF13173
555779.Dthio_PD0073(PF00589)
555779.Dthio_PD1072(PF08448)
555779.Dthio_PD1418(PF00589)
555779.Dthio_PD1099(PF10609)
555779.Dthio_PD0847(PF03050)
555779.Dthio_PD2684(PF03050)
555779.Dthio_PD2832(PF08843)
555779.Dthio_PD3000(PF03050)
555779.Dthio_PD0689(PF13188)
555779.Dthio_PD3796(PF08843)
555779.Dthio_PD0065(PF01695)
555779.Dthio_PD0060(PF00589)
555779.Dthio_PD0896(PF16983)
555779.Dthio_PD3277(PF02958)
555779.Dthio_PD3785(PF08448)
555779.Dthio_PD0650PF13173
555779.Dthio_PD0486(PF00589)
555779.Dthio_PD2823(PF10609)
555779.Dthio_PD2647(PF03050)
555779.Dthio_PD0463(PF01695)
555779.Dthio_PD0088PF02899
555779.Dthio_PD0089(PF00589)
555779.Dthio_PD0081(PF00589)
555779.Dthio_PD0082(PF00589)
555779.Dthio_PD3684(PF08843)
555779.Dthio_PD1132(PF08448)
555779.Dthio_PD2674PF13173
555779.Dthio_PD2671(PF01946)
555779.Dthio_PD3712(PF03050)
555779.Dthio_PD3215(PF02943)
555779.Dthio_PD0741(PF03050)
555779.Dthio_PD3441(PF00862)
555779.Dthio_PD0534PF13173
555779.Dthio_PD3533(PF01695)
555779.Dthio_PD1759(PF07927)
555779.Dthio_PD1751(PF03050)
555779.Dthio_PD0751PF02899
555779.Dthio_PD1117(PF13187)
555779.Dthio_PD1577(PF03567)
555779.Dthio_PD0988(PF01627)
555779.Dthio_PD2581PF13173
555779.Dthio_PD2580PF13173
555779.Dthio_PD2059(PF08448)
555779.Dthio_PD0969(PF08448)
555779.Dthio_PD2123PF13173
555779.Dthio_PD1963(PF01946)
555779.Dthio_PD3234(PF13187)
555779.Dthio_PD3233(PF13187)
555779.Dthio_PD3231(PF13187)
555779.Dthio_PD0436PF13173
555779.Dthio_PD0184(PF07927)
555779.Dthio_PD0343(PF10609)
555779.Dthio_PD0767PF13173
555779.Dthio_PD0768PF13173
555779.Dthio_PD1107(PF01627)
555779.Dthio_PD0293(PF13188)
555779.Dthio_PD2862(PF08843)
555779.Dthio_PD2601(PF00589)
555779.Dthio_PD0991(PF03059)
555779.Dthio_PD2596(PF00589)
555779.Dthio_PD2590(PF03050)
555779.Dthio_PD0971(PF08448)
555779.Dthio_PD0977(PF08448)
555779.Dthio_PD0978(PF08448)
555779.Dthio_PD1482(PF07927)
555779.Dthio_PD2630(PF08448)
555779.Dthio_PD3431PF01591
555779.Dthio_PD3723PF13173
555779.Dthio_PD1835(PF13246)
555779.Dthio_PD1497(PF01695)
555779.Dthio_PD2938PF13173
555779.Dthio_PD3715PF13173
555779.Dthio_PD0621(PF08448)
555779.Dthio_PD0378(PF08448)
555779.Dthio_PD1628(PF13188)
555779.Dthio_PD1622(PF13187)
555779.Dthio_PD0001PF02899
555779.Dthio_PD1535(PF00589)
555779.Dthio_PD0394(PF02026)
555779.Dthio_PD2896(PF08448)
555779.Dthio_PD2890PF14853
555779.Dthio_PD2363(PF08448)
555779.Dthio_PD3704(PF03050)
555779.Dthio_PD0494(PF00589)
555779.Dthio_PD0493(PF00589)
555779.Dthio_PD0490(PF00589)
555779.Dthio_PD0544(PF01627)
555779.Dthio_PD0035(PF01936)
555779.Dthio_PD0031(PF00589)
555779.Dthio_PD1521PF00362
555779.Dthio_PD2428PF01807
555779.Dthio_PD2084(PF01695)
555779.Dthio_PD1602(PF13246)
555779.Dthio_PD1738(PF03050)
555779.Dthio_PD0022(PF03050)
555779.Dthio_PD0027(PF03050)
555779.Dthio_PD1466(PF13911)
555779.Dthio_PD2989(PF00589)
555779.Dthio_PD2746(PF01627)
555779.Dthio_PD1879(PF01695)
555779.Dthio_PD3348(PF08448)
555779.Dthio_PD3612(PF01695)
555779.Dthio_PD0236(PF01627)
555779.Dthio_PD1726PF13173
555779.Dthio_PD0053(PF01695)
555779.Dthio_PD1619(PF13187)
555779.Dthio_PD3830(PF08448)
555779.Dthio_PD3833(PF03050)
555779.Dthio_PD1472(PF10143)
555779.Dthio_PD2978(PF01695)
555779.Dthio_PD2996PF00362

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: YES (FDR = 0.5 %)
  • Functional Type III secretion system: NO (FDR = 12.5 %)
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: NO (FDR = 7.7 %)

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================