Effective results for Sulfurimonas autotrophica DSM 16294 (eggnog40)

Summary

Number of putative secreted proteins: 20
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 10 eukaryotic-like domains, contained in 20 proteins (0 high, 20 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
563040.Saut_1906(PF13899)ER
563040.Saut_0087(PF13899)ER
563040.Saut_0038(PF13899)ER
563040.Saut_1626(PF03190)ER
563040.Saut_0310(PF02112)(mitochondrial)
563040.Saut_0830(PF13899)ER
563040.Saut_0753(PF03190)ER
563040.Saut_0998(PF13899)ER
563040.Saut_1513(PF02516)(ER); ER
563040.Saut_2053(PF13899)ER
563040.Saut_1330(PF03190)ER
563040.Saut_0426(PF02689)
563040.Saut_0887(PF01142)
563040.Saut_0958(PF01871)
563040.Saut_0122(PF01871)
563040.Saut_1578(PF16114)
563040.Saut_0877(PF02943)
563040.Saut_0076(PF12513)
563040.Saut_1253(PF01142)
563040.Saut_0972(PF03190)

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: YES (FDR = 0.5 %)
  • Functional Type III secretion system: NO (FDR = 12.5 %)
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: NO (FDR = 7.7 %)

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================