Effective results for Brachyspira hyodysenteriae WA1 (eggnog40)

Summary

Number of putative secreted proteins: 202
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 27 eukaryotic-like domains, contained in 202 proteins (65 high, 137 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
565034.BHWA1_00107PF12796 PF13857 PF13606 PF13637ER
565034.BHWA1_00116PF12796 PF00023 PF13857ER
565034.BHWA1_00072PF12796 PF13606 PF13857ER
565034.BHWA1_02034PF12796 PF13857 PF13637ER
565034.BHWA1_00481PF12796 PF13637ER
565034.BHWA1_00854PF12796 PF13637ER
565034.BHWA1_02196PF13606 PF13637ER
565034.BHWA1_00591PF12796 PF13606ER
565034.BHWA1_00596PF12796 PF13637ER
565034.BHWA1_01883(PF13181) (PF00515)ER
565034.BHWA1_01878PF12796 PF13857ER
565034.BHWA1_01125PF12796 PF13637ER
565034.BHWA1_01127PF12796 PF13606ER
565034.BHWA1_01425PF12796 PF13637ER
565034.BHWA1_00249PF12796 PF00023ER
565034.BHWA1_00295PF12796 PF00023ER
565034.BHWA1_02450PF12796 PF13637ER
565034.BHWA1_01375(PF02743)ER
565034.BHWA1_01485(PF04471)ER
565034.BHWA1_00377PF02096ER; (ER)
565034.BHWA1_00577PF02096ER
565034.BHWA1_00576PF02096ER
565034.BHWA1_00570PF02096ER; (ER)
565034.BHWA1_00573(PF01633)mitochondrial
565034.BHWA1_00572(PF01633)(mitochondrial)
565034.BHWA1_02615(PF13174)ER
565034.BHWA1_01036PF12796ER
565034.BHWA1_00966(PF12895)ER
565034.BHWA1_00548(PF02743)ER
565034.BHWA1_00549(PF02743)ER
565034.BHWA1_01633(PF13181) (PF00515) (PF07719)
565034.BHWA1_00390PF12796ER
565034.BHWA1_00979(PF02743)ER
565034.BHWA1_01603(PF13181) (PF00515) (PF07719)
565034.BHWA1_00232(PF13181)ER
565034.BHWA1_01059PF12796ER
565034.BHWA1_01058PF12796ER
565034.BHWA1_01055PF12796ER
565034.BHWA1_01054(PF03724)ER
565034.BHWA1_01941(PF13181) (PF00515) (PF07719)
565034.BHWA1_01722(PF02743)ER
565034.BHWA1_01614(PF01554)ER
565034.BHWA1_01539PF02096ER
565034.BHWA1_00007(PF07719)ER
565034.BHWA1_01283(PF02743)ER
565034.BHWA1_01284(PF02743)ER
565034.BHWA1_00135(PF02743)(mitochondrial)
565034.BHWA1_01195PF12796ER
565034.BHWA1_02080PF02096ER
565034.BHWA1_00951(PF13181)ER
565034.BHWA1_00480PF12796ER
565034.BHWA1_00822(PF01501)(mitochondrial)
565034.BHWA1_01660(PF04471)ER
565034.BHWA1_01661(PF04471)ER
565034.BHWA1_01291(PF13181)ER
565034.BHWA1_02162PF12796 PF00023 PF13637
565034.BHWA1_02414PF12796ER
565034.BHWA1_00453(PF01442)ER
565034.BHWA1_01675(PF01554)ER
565034.BHWA1_01462(PF00209)(ER)
565034.BHWA1_00209PF12796ER
565034.BHWA1_00208PF12796ER
565034.BHWA1_02195PF13857ER
565034.BHWA1_02197PF13637ER
565034.BHWA1_02198PF12796ER
565034.BHWA1_00593PF12796 PF13857 PF13637
565034.BHWA1_00595PF12796ER
565034.BHWA1_00444(PF02743)ER
565034.BHWA1_01642(PF02743)ER
565034.BHWA1_00052(PF02743)ER
565034.BHWA1_02527(PF13181) (PF00515)(mitochondrial)
565034.BHWA1_02528(PF13181) (PF00515) (PF07719)
565034.BHWA1_02529(PF13181) (PF00515)(plastid)
565034.BHWA1_00303PF12796 PF00023 PF13637
565034.BHWA1_01657(PF02743)ER
565034.BHWA1_01656(PF02743)ER
565034.BHWA1_01659(PF04471)ER
565034.BHWA1_01895PF12796ER
565034.BHWA1_00684PF12796ER
565034.BHWA1_00463(PF02743)ER
565034.BHWA1_01302(PF02743)ER
565034.BHWA1_02033PF12796ER
565034.BHWA1_02035PF12796ER
565034.BHWA1_01126PF12796ER
565034.BHWA1_00892(PF03724)ER
565034.BHWA1_00893(PF03724)ER
565034.BHWA1_00417(PF02743)ER; (ER)
565034.BHWA1_00800(PF02915)ER
565034.BHWA1_01420(PF13181) (PF12895) (PF07719)
565034.BHWA1_00794PF13637ER
565034.BHWA1_00248PF12796ER
565034.BHWA1_02303(PF02743)ER
565034.BHWA1_02302(PF02743)ER
565034.BHWA1_02017(PF13181) (PF12895) (PF13174)
565034.BHWA1_00341(PF03724)ER
565034.BHWA1_01350(PF02743)ER; (ER)
565034.BHWA1_01590(PF02743)ER
565034.BHWA1_02461(PF00209)(ER)
565034.BHWA1_01171(PF13174)ER
565034.BHWA1_00424(PF02743)ER
565034.BHWA1_00511(PF07719)ER
565034.BHWA1_00741(PF13181)ER
565034.BHWA1_00166(PF02743)(ER)
565034.BHWA1_00361PF12796ER
565034.BHWA1_01015(PF02743)ER
565034.BHWA1_01014(PF02743)ER
565034.BHWA1_01017(PF02743)ER
565034.BHWA1_00567(PF13174)ER
565034.BHWA1_00173(PF13181) (PF00515)
565034.BHWA1_01627(PF02743)(mitochondrial)
565034.BHWA1_00760(PF13181) (PF07719)
565034.BHWA1_00771(PF13181) (PF00515)
565034.BHWA1_00970(PF13181) (PF00515)
565034.BHWA1_01820(PF13181) (PF00515)
565034.BHWA1_01616(PF13181) (PF13174)
565034.BHWA1_00221PF12796 PF00023
565034.BHWA1_00220PF12796 PF00023
565034.BHWA1_00483(PF13181) (PF13174)
565034.BHWA1_01993(PF13181) (PF00515)
565034.BHWA1_01527(PF13181) (PF13174)
565034.BHWA1_00104PF12796 PF13606
565034.BHWA1_02163(PF13181)(mitochondrial)
565034.BHWA1_00594PF12796 PF13637
565034.BHWA1_01643(PF00515) (PF07719)
565034.BHWA1_02237(PF13181) (PF00515)
565034.BHWA1_00118(PF01554)(ER)
565034.BHWA1_00784(PF13181) (PF00515)
565034.BHWA1_00408PF12796 PF00023
565034.BHWA1_02019(PF02915)(mitochondrial)
565034.BHWA1_01920(PF00209)(ER)
565034.BHWA1_01164(PF13181) (PF07719)
565034.BHWA1_00980PF12796 PF13857
565034.BHWA1_00981PF12796 PF00023
565034.BHWA1_01578(PF01554)
565034.BHWA1_00370(PF07719)
565034.BHWA1_02448PF12796
565034.BHWA1_02110(PF04471)
565034.BHWA1_02441PF12796
565034.BHWA1_01189(PF00209)
565034.BHWA1_01978(PF07719)
565034.BHWA1_01622(PF01554)
565034.BHWA1_01621(PF01554)
565034.BHWA1_01628(PF13181)
565034.BHWA1_01147(PF03382)
565034.BHWA1_02548(PF03724)
565034.BHWA1_00969(PF03382)
565034.BHWA1_01964(PF00515)
565034.BHWA1_01962(PF02915)
565034.BHWA1_00391(PF06241)
565034.BHWA1_00974(PF01554)
565034.BHWA1_01952(PF01554)
565034.BHWA1_01955(PF02743)
565034.BHWA1_01737(PF01554)
565034.BHWA1_01739(PF01554)
565034.BHWA1_00703(PF03382)
565034.BHWA1_00012(PF00209)
565034.BHWA1_01056PF12796
565034.BHWA1_00831(PF01501)
565034.BHWA1_01286(PF13181)
565034.BHWA1_00226(PF13181)
565034.BHWA1_00827(PF01501)
565034.BHWA1_00826(PF01501)not used
565034.BHWA1_01071(PF16314)
565034.BHWA1_02210(PF02915)
565034.BHWA1_00924(PF03382)
565034.BHWA1_00921(PF07678)
565034.BHWA1_00734PF12796
565034.BHWA1_01085(PF02915)
565034.BHWA1_02200(PF01501)
565034.BHWA1_02204(PF02743)
565034.BHWA1_02343PF12796
565034.BHWA1_01259PF12796
565034.BHWA1_01096PF12796
565034.BHWA1_01877PF12796
565034.BHWA1_00479PF13637
565034.BHWA1_01317(PF13910)
565034.BHWA1_00911(PF01554)
565034.BHWA1_01790PF12796
565034.BHWA1_01798(PF00515)
565034.BHWA1_00467(PF01554)
565034.BHWA1_02256(PF02915)
565034.BHWA1_00522(PF02743)
565034.BHWA1_00796(PF13181)
565034.BHWA1_01935(PF02743)
565034.BHWA1_00650(PF01554)
565034.BHWA1_01322(PF01554)
565034.BHWA1_02651(PF13181)
565034.BHWA1_02498(PF01195)
565034.BHWA1_02497(PF01195)
565034.BHWA1_02479(PF01554)
565034.BHWA1_02271PF12796
565034.BHWA1_01741(PF01554)
565034.BHWA1_01355(PF01554)
565034.BHWA1_00749(PF13181)
565034.BHWA1_01018(PF01554)
565034.BHWA1_00983(PF04218)
565034.BHWA1_00566(PF13174)
565034.BHWA1_00751(PF03382)
565034.BHWA1_00753(PF03382)
565034.BHWA1_00752(PF03382)
565034.BHWA1_00755(PF03382)
565034.BHWA1_00756(PF03382)

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: YES (FDR = 0.5 %)
  • Functional Type III secretion system: NO (FDR = 12.5 %)
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: NO (FDR = 7.7 %)

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================