Metamenu

Effective results for Streptomyces ghanaensis ATCC 14672 (eggnog40)

Summary

Number of putative secreted proteins: 303
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 62 eukaryotic-like domains, contained in 303 proteins (4 high, 299 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
566461.SSFG_04894(PF04539) (PF04545)ER
566461.SSFG_07376(PF13613) (PF13359)mitochondrial; plastid
566461.SSFG_00784(PF01341)ER
566461.SSFG_00432(PF16483)mitochondrial; ER
566461.SSFG_05291(PF13462)(mitochondrial)
566461.SSFG_02694(PF04545)(mitochondrial)
566461.SSFG_05645(PF02983)(mitochondrial)
566461.SSFG_00067(PF02153)mitochondrial
566461.SSFG_00454(PF07228)(ER)
566461.SSFG_07290(PF13683)(mitochondrial)
566461.SSFG_07292(PF00781)mitochondrial
566461.SSFG_01996(PF01580)(mitochondrial); plastid
566461.SSFG_00868(PF00781)mitochondrial; (mitochondrial)
566461.SSFG_03294(PF02537)ER
566461.SSFG_06523(PF03067)ER
566461.SSFG_06527(PF07228)ER
566461.SSFG_05015(PF07510)mitochondrial
566461.SSFG_04538(PF03067)ER
566461.SSFG_07573(PF13683)ER
566461.SSFG_07511(PF13613)mitochondrial; (mitochondrial)
566461.SSFG_04139(PF09683)ER
566461.SSFG_01564(PF00781)(ER)
566461.SSFG_05930(PF01595)ER
566461.SSFG_05931(PF01595)ER
566461.SSFG_03796(PF07228)(mitochondrial)
566461.SSFG_07474(PF13359)(mitochondrial); (plastid)
566461.SSFG_00483(PF07228)mitochondrial; (mitochondrial)
566461.SSFG_06085(PF01595)ER
566461.SSFG_06084(PF01595)ER
566461.SSFG_07430(PF07510)ER
566461.SSFG_06950(PF01774)(mitochondrial)
566461.SSFG_07380(PF13613)mitochondrial; plastid
566461.SSFG_04837(PF01595)ER
566461.SSFG_01900(PF02537)(ER); ER
566461.SSFG_06644(PF12138)(ER)
566461.SSFG_07347(PF01609)(ER)
566461.SSFG_00407(PF13462)ER
566461.SSFG_07813(PF00781)mitochondrial; plastid
566461.SSFG_03484(PF02342)(mitochondrial)
566461.SSFG_05650(PF03067)ER
566461.SSFG_06183(PF03211)mitochondrial; (mitochondrial)
566461.SSFG_03917(PF14124)(mitochondrial)
566461.SSFG_03911(PF15588)mitochondrial
566461.SSFG_00462(PF02983)ER
566461.SSFG_07286(PF02342)(mitochondrial)
566461.SSFG_04666(PF01580)ER
566461.SSFG_04044(PF03259)ER
566461.SSFG_00817(PF00457)(ER)
566461.SSFG_00386(PF03067)ER
566461.SSFG_00387(PF01670)ER
566461.SSFG_00037(PF13359)(mitochondrial)
566461.SSFG_05001(PF02342)(mitochondrial)
566461.SSFG_02054(PF01670)ER; (ER)
566461.SSFG_00525(PF02983)ER
566461.SSFG_06030(PF02342) (PF04471)(mitochondrial)
566461.SSFG_00990(PF07510)ER
566461.SSFG_00171(PF03067)mitochondrial
566461.SSFG_00504(PF16483)(ER)
566461.SSFG_00152(PF03067)ER
566461.SSFG_01787(PF01595)ER
566461.SSFG_01786(PF01595)ER
566461.SSFG_03312(PF01595)ER
566461.SSFG_03313(PF01595)ER
566461.SSFG_00544(PF02983)(ER)
566461.SSFG_06840(PF07228)(mitochondrial); (plastid)
566461.SSFG_07461(PF13683)(mitochondrial)
566461.SSFG_02400(PF03029)(mitochondrial)
566461.SSFG_01226(PF01341)ER
566461.SSFG_02090(PF07228)ER
566461.SSFG_03477(PF14378)ER
566461.SSFG_01729(PF13462)mitochondrial
566461.SSFG_07182(PF13613) (PF13359)(ER)
566461.SSFG_06132(PF13653)mitochondrial
566461.SSFG_00193(PF13613)(mitochondrial)
566461.SSFG_01742(PF07228)ER
566461.SSFG_03666(PF02342)(ER)
566461.SSFG_06484(PF04539) (PF04545)
566461.SSFG_01999(PF07228)(mitochondrial)
566461.SSFG_05624(PF02153)(ER)
566461.SSFG_00001(PF13613)(plastid)
566461.SSFG_03734(PF04539) (PF04545)
566461.SSFG_03735(PF04539) (PF04545)
566461.SSFG_07703(PF02153)(plastid)
566461.SSFG_04533(PF07646)(mitochondrial)
566461.SSFG_00353(PF04539) (PF04545)
566461.SSFG_04307(PF04539) (PF04545)
566461.SSFG_06811(PF02543) (PF16861)
566461.SSFG_06455(PF04539) (PF04545)
566461.SSFG_05027(PF14378)(mitochondrial)
566461.SSFG_06503(PF02543) (PF16861)
566461.SSFG_01929(PF04539) (PF04545)
566461.SSFG_02909(PF01000) (PF01193)
566461.SSFG_04400(PF01580)(ER)
566461.SSFG_05087(PF03067)(ER)
566461.SSFG_04936(PF10435) (PF13363)
566461.SSFG_02442(PF00781)(mitochondrial)
566461.SSFG_02440(PF04539) (PF04545)
566461.SSFG_01329(PF02543) (PF16861)
566461.SSFG_07113(PF13462)(plastid)
566461.SSFG_06532(PF04471)(mitochondrial)
566461.SSFG_00816(PF07228)(plastid)
566461.SSFG_07562(PF03029)(ER)
566461.SSFG_01248(PF04539) (PF04545)
566461.SSFG_07178(PF13613) (PF01609)
566461.SSFG_07529(PF01609)(mitochondrial)
566461.SSFG_06461(PF07228)(mitochondrial)
566461.SSFG_06808(PF02543) (PF16861)
566461.SSFG_05061(PF04539) (PF04545)
566461.SSFG_04165(PF04539) (PF04545)
566461.SSFG_06417(PF04539) (PF04545)
566461.SSFG_04141(PF13613) (PF13359)
566461.SSFG_00701(PF13427)(ER)
566461.SSFG_00642(PF04539) (PF04545)
566461.SSFG_02099(PF04539) (PF04545)
566461.SSFG_07378(PF01000) (PF01193)
566461.SSFG_06489(PF07228)
566461.SSFG_05467(PF02342)
566461.SSFG_02158(PF03259)
566461.SSFG_06677(PF07228)
566461.SSFG_06671(PF13427)
566461.SSFG_06920(PF01774)
566461.SSFG_06922(PF01730)
566461.SSFG_06923(PF00449)
566461.SSFG_07330(PF13683)not used
566461.SSFG_07338(PF01609)
566461.SSFG_02974(PF09346)
566461.SSFG_02366(PF01609)
566461.SSFG_02367(PF01609)
566461.SSFG_02361(PF01580)
566461.SSFG_03236(PF01580)
566461.SSFG_07318(PF03029)
566461.SSFG_05647(PF02983)not used
566461.SSFG_02503(PF12138)
566461.SSFG_03923(PF01609)
566461.SSFG_03296(PF02537)
566461.SSFG_06528(PF07228)
566461.SSFG_06897PF02945
566461.SSFG_03123PF08213not used
566461.SSFG_01049(PF01580)
566461.SSFG_05323(PF13462)
566461.SSFG_04558(PF14378)
566461.SSFG_00022(PF13359)
566461.SSFG_06544(PF07228)
566461.SSFG_07704(PF08608)
566461.SSFG_01663(PF17048)
566461.SSFG_04050(PF08608)
566461.SSFG_02607(PF07228)
566461.SSFG_05830(PF13462)
566461.SSFG_01069PF02945
566461.SSFG_04532(PF01341)
566461.SSFG_02873(PF09445)
566461.SSFG_07575(PF01609)
566461.SSFG_07161(PF07228)
566461.SSFG_01230(PF07931)
566461.SSFG_00516(PF07228)
566461.SSFG_05859(PF05491)
566461.SSFG_03697(PF07228)
566461.SSFG_02853(PF04545)
566461.SSFG_07516(PF03457)not used
566461.SSFG_02581(PF07228)
566461.SSFG_04422(PF04545)
566461.SSFG_04134(PF13359)not used
566461.SSFG_01562(PF07228)
566461.SSFG_00965(PF13823)
566461.SSFG_06146(PF03029)
566461.SSFG_06148(PF03259)
566461.SSFG_00148(PF07228)
566461.SSFG_01541(PF00449)
566461.SSFG_01894(PF00449)
566461.SSFG_01891(PF01774)
566461.SSFG_01893(PF01730)not used
566461.SSFG_01899(PF02537)
566461.SSFG_06874(PF04928)
566461.SSFG_07471(PF13359)not used
566461.SSFG_00339(PF02537)
566461.SSFG_01422(PF04545)
566461.SSFG_01427(PF11338)
566461.SSFG_06433(PF02342)
566461.SSFG_00106(PF04471)
566461.SSFG_07451(PF13683)
566461.SSFG_05751(PF03029)
566461.SSFG_04818(PF07228)
566461.SSFG_01464(PF13823)
566461.SSFG_01462(PF13823)
566461.SSFG_06953(PF00449)
566461.SSFG_06952(PF01730)
566461.SSFG_00738(PF04545)
566461.SSFG_07389(PF03457)
566461.SSFG_06386(PF07228)
566461.SSFG_05129(PF07228)
566461.SSFG_07419(PF07510)
566461.SSFG_01715(PF05448)
566461.SSFG_06974(PF08392)
566461.SSFG_07361(PF14378)
566461.SSFG_07367(PF07228)
566461.SSFG_06367(PF13462)
566461.SSFG_03467(PF03029)
566461.SSFG_06105(PF07228)
566461.SSFG_07197(PF13683)not used
566461.SSFG_02246(PF09348)
566461.SSFG_07342(PF01609)
566461.SSFG_06340(PF07228)
566461.SSFG_00181(PF09346)
566461.SSFG_04251(PF09346)
566461.SSFG_06619(PF03259)
566461.SSFG_05916(PF01341)
566461.SSFG_01757(PF03029)
566461.SSFG_01755(PF03259)
566461.SSFG_01115(PF14378)
566461.SSFG_06933(PF06241)
566461.SSFG_07320(PF03259)
566461.SSFG_02944(PF02983)
566461.SSFG_00890(PF03259)
566461.SSFG_01947(PF02342)
566461.SSFG_03952(PF02342)
566461.SSFG_03229(PF04545)
566461.SSFG_07246(PF03457)
566461.SSFG_07245(PF01609)not used
566461.SSFG_01090PF02945
566461.SSFG_07495(PF07228)
566461.SSFG_04748(PF07228)
566461.SSFG_02164(PF03029)
566461.SSFG_02160(PF03029)
566461.SSFG_02162(PF03259)
566461.SSFG_07263(PF13683)
566461.SSFG_07268(PF13823)
566461.SSFG_01632(PF03259)
566461.SSFG_01634(PF03029)
566461.SSFG_07851(PF03457)
566461.SSFG_03915(PF14124)
566461.SSFG_00461(PF07228)
566461.SSFG_00261(PF02342)
566461.SSFG_07288(PF02342)
566461.SSFG_04023(PF01129)
566461.SSFG_00872(PF11338)
566461.SSFG_05966(PF03029)
566461.SSFG_02886(PF04539)
566461.SSFG_01861(PF00457)
566461.SSFG_05397(PF02342)
566461.SSFG_04042(PF03029)
566461.SSFG_05491(PF03211)
566461.SSFG_01385(PF00449)
566461.SSFG_01386(PF01730)
566461.SSFG_01388(PF01774)
566461.SSFG_04729(PF04545)
566461.SSFG_07564(PF03259)
566461.SSFG_03095(PF13823)
566461.SSFG_06574(PF00781)
566461.SSFG_05000(PF02342)
566461.SSFG_05004(PF02342)
566461.SSFG_03465(PF03259)
566461.SSFG_03924(PF01609)
566461.SSFG_03519(PF07228)
566461.SSFG_03076(PF07228)
566461.SSFG_06104(PF07228)not used
566461.SSFG_00346(PF07228)
566461.SSFG_00347(PF07228)
566461.SSFG_03532(PF07228)
566461.SSFG_07523(PF09346)
566461.SSFG_06462(PF07228)
566461.SSFG_06467(PF07228)
566461.SSFG_02013(PF01580)
566461.SSFG_00563(PF07228)
566461.SSFG_05963(PF03259)
566461.SSFG_06782(PF07228)
566461.SSFG_01413(PF00070)
566461.SSFG_05062(PF07510)
566461.SSFG_00138(PF13359)
566461.SSFG_03595(PF00643)
566461.SSFG_05749(PF03259)
566461.SSFG_05746(PF00781)
566461.SSFG_06988(PF09346)
566461.SSFG_03358(PF00781)
566461.SSFG_02402(PF03259)
566461.SSFG_07449(PF01609)
566461.SSFG_00490(PF03259)
566461.SSFG_01471(PF02342)
566461.SSFG_04149(PF01580)
566461.SSFG_01284(PF07228)
566461.SSFG_03417(PF01580)
566461.SSFG_06613(PF09348)
566461.SSFG_06617(PF03029)
566461.SSFG_04848(PF01234)
566461.SSFG_05138(PF14378)
566461.SSFG_07404(PF01609)not used
566461.SSFG_04261(PF07510)
566461.SSFG_03896(PF07228)
566461.SSFG_06633(PF07931)
566461.SSFG_06968(PF05491)
566461.SSFG_04676(PF04471)
566461.SSFG_04672(PF01609)
566461.SSFG_04673(PF01609)
566461.SSFG_00741(PF07228)
566461.SSFG_07211(PF01609)
566461.SSFG_07212(PF01609)
566461.SSFG_07379(PF13683)
566461.SSFG_07377(PF13683)
566461.SSFG_06355(PF13462)
566461.SSFG_01351(PF05448)
566461.SSFG_06904(PF04471)
566461.SSFG_07233(PF13359)
566461.SSFG_00888(PF03029)
566461.SSFG_06335(PF05448)

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: NO (FDR = 0.5 %)
  • Functional Type III secretion system: N.D.
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: N.D.

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================