Effective results for Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) (eggnog40)

Summary

Number of putative secreted proteins: 141
- Predicted by T4SEpre: 87
- Predicted by EffectiveELD: 10 eukaryotic-like domains, contained in 67 proteins (30 high, 37 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): Type IV

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
572265.HDEF_0166+ER
572265.HDEF_0164+ER; (ER)
572265.HDEF_1342+ER
572265.HDEF_2230(PF13127)ER
572265.HDEF_1119+(mitochondrial); mitochondrial
572265.HDEF_0411+ER
572265.HDEF_0981PF01844mitochondrial
572265.HDEF_1817+ER
572265.HDEF_1007(PF00959)ER; (ER)
572265.HDEF_1269+(ER)
572265.HDEF_0321+ER
572265.HDEF_1499+ER
572265.HDEF_1843+(mitochondrial)
572265.HDEF_1679+mitochondrial
572265.HDEF_1675(PF00959)ER
572265.HDEF_1333+ER
572265.HDEF_1459(PF00959)ER; (ER)
572265.HDEF_1945+ER
572265.HDEF_0138+(ER)
572265.HDEF_2002PF01844mitochondrial
572265.HDEF_2022PF01844mitochondrial
572265.HDEF_0434(PF13358)ER
572265.HDEF_1345(PF13358)(mitochondrial)
572265.HDEF_1295(PF13358)(mitochondrial)
572265.HDEF_1903(PF13358)(mitochondrial)
572265.HDEF_2237+(plastid)
572265.HDEF_1935(PF13358)(mitochondrial)
572265.HDEF_2049(PF13358)(mitochondrial)
572265.HDEF_0413(PF13358)(mitochondrial)
572265.HDEF_0982PF00078 PF01844
572265.HDEF_1251PF00078 PF01844
572265.HDEF_0992PF00078 PF01844
572265.HDEF_0351PF00078 PF01844
572265.HDEF_2129+(ER)
572265.HDEF_1000(PF13358)(mitochondrial)
572265.HDEF_2202(PF13358)(mitochondrial)
572265.HDEF_1015(PF13358)(plastid)
572265.HDEF_1461(PF13358)(mitochondrial)
572265.HDEF_0237(PF13358)(mitochondrial)
572265.HDEF_0836(PF13358)(mitochondrial)
572265.HDEF_1079(PF13358)(mitochondrial)
572265.HDEF_2321PF00078 PF01844
572265.HDEF_2253+(mitochondrial)
572265.HDEF_0796PF00078 PF01844
572265.HDEF_1444(PF13358)(mitochondrial)
572265.HDEF_1223PF00078 PF01844
572265.HDEF_2242(PF13358)(mitochondrial)
572265.HDEF_2181(PF13358)(mitochondrial)
572265.HDEF_2188(PF13358)(mitochondrial)
572265.HDEF_2290+PF00620
572265.HDEF_1937PF00078 PF01844
572265.HDEF_2195(PF13358)(mitochondrial)
572265.HDEF_0582PF00078 PF01844
572265.HDEF_0619PF00078 PF01844
572265.HDEF_0616(PF13358)(mitochondrial)
572265.HDEF_0297PF00078 PF01844
572265.HDEF_1437(PF13358)(mitochondrial)
572265.HDEF_1415PF00078 PF01844
572265.HDEF_0865+(plastid)
572265.HDEF_0263+(mitochondrial)
572265.HDEF_0284(PF13358)(mitochondrial)
572265.HDEF_0726PF00078 PF01844
572265.HDEF_1156PF00078 PF01844
572265.HDEF_1371(PF13358)(mitochondrial)
572265.HDEF_1375PF00078 PF01844
572265.HDEF_2001PF00078 PF01844
572265.HDEF_1706(PF13358)(mitochondrial)
572265.HDEF_0847PF00078 PF01844
572265.HDEF_0441PF00078 PF01844
572265.HDEF_0935(PF13358)(mitochondrial)
572265.HDEF_2023PF00078 PF01844
572265.HDEF_0540PF00078 PF01844
572265.HDEF_1619+
572265.HDEF_1767+
572265.HDEF_2239+
572265.HDEF_0950+
572265.HDEF_0398(PF00102)
572265.HDEF_0372+
572265.HDEF_1112PF01844
572265.HDEF_2139(PF13358)
572265.HDEF_1194+
572265.HDEF_0969+
572265.HDEF_0983PF00078
572265.HDEF_1038+
572265.HDEF_1816+
572265.HDEF_2076+
572265.HDEF_0409(PF00959)
572265.HDEF_0575+
572265.HDEF_0574(PF07798)
572265.HDEF_0190+
572265.HDEF_1136+
572265.HDEF_2063+
572265.HDEF_0217+
572265.HDEF_0505+
572265.HDEF_0327+
572265.HDEF_0031+
572265.HDEF_0037+
572265.HDEF_1011PF01844
572265.HDEF_1270+
572265.HDEF_1272+
572265.HDEF_1653(PF04383)
572265.HDEF_2302+
572265.HDEF_1510(PF07720)
572265.HDEF_1514+
572265.HDEF_2088+
572265.HDEF_0010+
572265.HDEF_1477+
572265.HDEF_1474+
572265.HDEF_1502+
572265.HDEF_1542+
572265.HDEF_1649+
572265.HDEF_1155+
572265.HDEF_1997+
572265.HDEF_2336+
572265.HDEF_0497+
572265.HDEF_0105+
572265.HDEF_0107+
572265.HDEF_1451PF01844
572265.HDEF_1456(PF04383)
572265.HDEF_1985+
572265.HDEF_1247+
572265.HDEF_1957+
572265.HDEF_0057+
572265.HDEF_0919+
572265.HDEF_0722+
572265.HDEF_1408+
572265.HDEF_1403+
572265.HDEF_2000PF00078
572265.HDEF_0920(PF07798)
572265.HDEF_0633+
572265.HDEF_0141+
572265.HDEF_0142+
572265.HDEF_0845+
572265.HDEF_0843+
572265.HDEF_0443+
572265.HDEF_0622+
572265.HDEF_1355+
572265.HDEF_1351+
572265.HDEF_1283+
572265.HDEF_2024PF00078
572265.HDEF_0897+

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: YES (FDR = 0.5 %)
  • Functional Type III secretion system: NO (FDR = 12.5 %)
  • Functional Type IV secretion system: YES (FDR = 7.2 %)
    Estimated copy number = 1.1 (11/10 KEGG proteins)
  • Functional Type VI secretion system: NO (FDR = 7.7 %)

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================