Effective results for Aminomonas paucivorans DSM 12260 (eggnog40)

Summary

Number of putative secreted proteins: 55
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 20 eukaryotic-like domains, contained in 55 proteins (2 high, 53 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
584708.Apau_1899(PF16653) (PF03435)(mitochondrial); mitochondrial
584708.Apau_0296(PF16653) (PF03435)(mitochondrial)
584708.Apau_1881(PF16653) (PF03435)(ER); ER
584708.Apau_0308(PF03313)mitochondrial; (mitochondrial)
584708.Apau_2329(PF16653) (PF03435)(mitochondrial)
584708.Apau_0369(PF03577)ER
584708.Apau_0368(PF03577)ER
584708.Apau_1901(PF16653) (PF03435)(mitochondrial)
584708.Apau_1902(PF02274)mitochondrial
584708.Apau_0711PF08434ER
584708.Apau_0119(PF02274)(mitochondrial)
584708.Apau_0290(PF13237)ER
584708.Apau_2196(PF01257)ER
584708.Apau_1873(PF03313)(mitochondrial)
584708.Apau_1500(PF01813)(mitochondrial)
584708.Apau_0458(PF03577)ER
584708.Apau_1852(PF01496)(ER)
584708.Apau_1849(PF01813)mitochondrial; (mitochondrial)
584708.Apau_1531(PF13237)mitochondrial
584708.Apau_0525(PF01257)(ER)
584708.Apau_0247(PF01257) (PF13237)
584708.Apau_2194(PF03577)(ER)
584708.Apau_0124(PF07837) (PF02971)
584708.Apau_1443(PF07837) (PF02971)
584708.Apau_0796(PF16653) (PF03435)
584708.Apau_0941(PF14336)
584708.Apau_2130(PF03313)
584708.Apau_0365(PF03313)
584708.Apau_1422(PF02274)
584708.Apau_2279(PF02274)
584708.Apau_0222(PF13237)
584708.Apau_2117(PF13237)not used
584708.Apau_1904(PF02274)
584708.Apau_0238(PF01257)
584708.Apau_0537PF04414
584708.Apau_0245(PF01257)
584708.Apau_0240(PF01257)
584708.Apau_0526(PF01257)
584708.Apau_0417(PF03313)
584708.Apau_2016(PF13237)
584708.Apau_2280(PF02274)
584708.Apau_0615(PF03522)
584708.Apau_0620(PF03266)
584708.Apau_1503(PF01990)
584708.Apau_1504(PF01992)
584708.Apau_1505(PF01991)
584708.Apau_1507(PF01496)
584708.Apau_0125(PF04961)
584708.Apau_1389(PF13237)
584708.Apau_1854(PF01990)
584708.Apau_1855(PF01991)
584708.Apau_1851(PF01992)
584708.Apau_2308(PF01257)
584708.Apau_1445(PF04961)
584708.Apau_0174(PF02274)

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: YES (FDR = 0.5 %)
  • Functional Type III secretion system: NO (FDR = 12.5 %)
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: NO (FDR = 7.7 %)

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================