Effective results for Streptococcus mitis SK597 (eggnog40)

Summary

Number of putative secreted proteins: 80
- Predicted by T4SEpre: 84
- Predicted by EffectiveELD: 7 eukaryotic-like domains, contained in 13 proteins (5 high, 8 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): (Type IV)

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
585204.SMSK597_0293+ER
585204.SMSK597_0030PF04103ER
585204.SMSK597_1514+ER
585204.SMSK597_1853+mitochondrial; (mitochondrial)
585204.SMSK597_0616+ER
585204.SMSK597_1339+(mitochondrial)
585204.SMSK597_1812+ER
585204.SMSK597_0783+ER
585204.SMSK597_1367+ER
585204.SMSK597_0145(PF03714)(mitochondrial)
585204.SMSK597_0567PF03083ER
585204.SMSK597_0002PF03083(ER)
585204.SMSK597_0004PF03083(ER)
585204.SMSK597_1772+ER
585204.SMSK597_0227PF02916(ER)
585204.SMSK597_1581+ER
585204.SMSK597_0989+ER
585204.SMSK597_0982+(ER); (mitochondrial)
585204.SMSK597_0345+mitochondrial
585204.SMSK597_1105+ER
585204.SMSK597_1119(PF04991)mitochondrial; (mitochondrial)
585204.SMSK597_1389+(mitochondrial); (plastid)
585204.SMSK597_1136+(mitochondrial)
585204.SMSK597_1506+(mitochondrial)
585204.SMSK597_1304+(mitochondrial)
585204.SMSK597_0440+(mitochondrial)
585204.SMSK597_0535+(mitochondrial)
585204.SMSK597_1657+
585204.SMSK597_0708+
585204.SMSK597_1273+
585204.SMSK597_1278+
585204.SMSK597_1653+
585204.SMSK597_0873+
585204.SMSK597_0600+
585204.SMSK597_0112+
585204.SMSK597_1851+
585204.SMSK597_0610+
585204.SMSK597_0850+
585204.SMSK597_0107+
585204.SMSK597_1828+
585204.SMSK597_0424+
585204.SMSK597_1191+
585204.SMSK597_0958+
585204.SMSK597_1530+
585204.SMSK597_0313+
585204.SMSK597_0655+
585204.SMSK597_1834+
585204.SMSK597_1303+
585204.SMSK597_1302(PF03596)
585204.SMSK597_0014+
585204.SMSK597_0549+
585204.SMSK597_0301+
585204.SMSK597_1044(PF04991)
585204.SMSK597_1048(PF04991)
585204.SMSK597_0150+
585204.SMSK597_0955+
585204.SMSK597_1031+
585204.SMSK597_1769+
585204.SMSK597_0360+
585204.SMSK597_1026+
585204.SMSK597_1023+
585204.SMSK597_0178+
585204.SMSK597_0174+
585204.SMSK597_0517+
585204.SMSK597_0990+
585204.SMSK597_1348+
585204.SMSK597_0980+
585204.SMSK597_0695+
585204.SMSK597_0183(PF03596)
585204.SMSK597_0868(PF03714)
585204.SMSK597_1590+
585204.SMSK597_0536+
585204.SMSK597_1619+
585204.SMSK597_0089+
585204.SMSK597_0266+
585204.SMSK597_0473+
585204.SMSK597_0861+
585204.SMSK597_1710+
585204.SMSK597_1391+
585204.SMSK597_1451(PF08975)

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: NO (FDR = 0.5 %)
  • Functional Type III secretion system: N.D.
  • Functional Type IV secretion system: YES (FDR = 7.2 %)
    Estimated copy number = 0 (0/0 KEGG proteins)
  • Functional Type VI secretion system: N.D.

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================