Effective results for Staphylococcus warneri L37603 (eggnog40)

Summary

Number of putative secreted proteins: 26
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 11 eukaryotic-like domains, contained in 26 proteins (11 high, 15 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
596319.STAWA0001_0215(PF11070)ER
596319.STAWA0001_0927(PF05154)ER
596319.STAWA0001_0392(PF04998) (PF04997) (PF05000)
596319.STAWA0001_1352PF05257ER; (ER)
596319.STAWA0001_0115PF05257ER
596319.STAWA0001_0947PF05257ER
596319.STAWA0001_2155(PF00344)(mitochondrial)
596319.STAWA0001_1077(PF05154)ER
596319.STAWA0001_1260PF05257ER
596319.STAWA0001_2326PF05257ER
596319.STAWA0001_1662PF05257(ER)
596319.STAWA0001_0342(PF04998) (PF05000)not used
596319.STAWA0001_0147PF05257(ER)
596319.STAWA0001_0322(PF00344)(mitochondrial)
596319.STAWA0001_2378(PF03253)ER; not used
596319.STAWA0001_0065(PF03630)
596319.STAWA0001_0665PF05257
596319.STAWA0001_1622PF05257
596319.STAWA0001_0334(PF04997)not used
596319.STAWA0001_1776PF08433
596319.STAWA0001_1658PF05257
596319.STAWA0001_0200(PF06039)
596319.STAWA0001_0162(PF06039)
596319.STAWA0001_1674(PF03253)
596319.STAWA0001_2292(PF05154)
596319.STAWA0001_1716(PF06039)

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: NO (FDR = 0.5 %)
  • Functional Type III secretion system: N.D.
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: N.D.

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================