Effective results for Treponema vincentii ATCC 35580 (eggnog40)

Summary

Number of putative secreted proteins: 35
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 16 eukaryotic-like domains, contained in 35 proteins (5 high, 30 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
596324.TREVI0001_0349(PF13176)ER
596324.TREVI0001_0353(PF13173)mitochondrial
596324.TREVI0001_1392(PF03266)(mitochondrial)
596324.TREVI0001_0432(PF01715)(mitochondrial)
596324.TREVI0001_2257(PF13176)ER
596324.TREVI0001_0412(PF13176)mitochondrial
596324.TREVI0001_2038PF02544ER
596324.TREVI0001_0873(PF13173)(mitochondrial)
596324.TREVI0001_0677PF02544ER
596324.TREVI0001_1764(PF12733)ER
596324.TREVI0001_0556(PF13176)ER
596324.TREVI0001_1751(PF12733)ER
596324.TREVI0001_1987(PF12733)ER
596324.TREVI0001_0777PF03727 PF00349
596324.TREVI0001_2069(PF13176)(mitochondrial)
596324.TREVI0001_2244(PF01715)(plastid)
596324.TREVI0001_1917(PF13151)(mitochondrial)
596324.TREVI0001_0850(PF11070)(ER)
596324.TREVI0001_1206(PF16314)(plastid)
596324.TREVI0001_1561(PF13176)
596324.TREVI0001_2518(PF13176)
596324.TREVI0001_0594(PF13173)
596324.TREVI0001_1507PF04548
596324.TREVI0001_0433(PF01715)
596324.TREVI0001_2015PF04733
596324.TREVI0001_1240(PF07998)
596324.TREVI0001_2254(PF07892)
596324.TREVI0001_1107(PF06245)
596324.TREVI0001_0245(PF13173)
596324.TREVI0001_1042(PF07892)
596324.TREVI0001_2162(PF06245)
596324.TREVI0001_2165(PF13151)
596324.TREVI0001_0843(PF13173)
596324.TREVI0001_2408(PF13173)
596324.TREVI0001_2321(PF13173)

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: YES (FDR = 0.5 %)
  • Functional Type III secretion system: NO (FDR = 12.5 %)
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: NO (FDR = 7.7 %)

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================