Metamenu

Effective results for Synechococcus sp. WH 7805 (eggnog40)

Summary

Number of putative secreted proteins: 140
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 107 eukaryotic-like domains, contained in 140 proteins (15 high, 125 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
59931.WH7805_13653(PF16639) (PF01333)(ER)
59931.WH7805_08766PF05019 (PF13924)(mitochondrial)
59931.WH7805_07711(PF13301)ER
59931.WH7805_07406(PF01716)ER
59931.WH7805_03382(PF11152)ER
59931.WH7805_06161(PF02931)ER
59931.WH7805_13688(PF02507)ER
59931.WH7805_06966(PF11909)(mitochondrial)
59931.WH7805_09519(PF16166)ER
59931.WH7805_07166(PF02605)mitochondrial; (mitochondrial)
59931.WH7805_06336(PF13301)ER
59931.WH7805_07486(PF07444)ER
59931.WH7805_13993(PF13326)ER
59931.WH7805_02842(PF12159)ER
59931.WH7805_06826(PF12046)ER
59931.WH7805_03167(PF12452)(ER)
59931.WH7805_11768(PF07444)ER; (ER)
59931.WH7805_06111(PF13301)ER
59931.WH7805_11393(PF06514)ER
59931.WH7805_04401(PF01789)ER
59931.WH7805_00050(PF11460)ER
59931.WH7805_09072(PF04481)mitochondrial
59931.WH7805_12198(PF11998)mitochondrial
59931.WH7805_11083(PF10664)(mitochondrial)
59931.WH7805_08867(PF00140)plastid
59931.WH7805_07161(PF00796)ER; not used
59931.WH7805_07616(PF02468)ER; not used
59931.WH7805_13963(PF11016)(ER)
59931.WH7805_02322(PF11347)(plastid)
59931.WH7805_07301(PF09366)(plastid)
59931.WH7805_07751(PF02533)(ER); not used
59931.WH7805_11773(PF06596)ER; not used
59931.WH7805_07991(PF00283)(ER); not used
59931.WH7805_07986(PF00284) (PF00283)
59931.WH7805_03642(PF06298)ER; not used
59931.WH7805_06736(PF05996)
59931.WH7805_02902(PF11264)
59931.WH7805_05046(PF02392)
59931.WH7805_03502(PF11210)
59931.WH7805_11753(PF00504)
59931.WH7805_06856(PF02531)
59931.WH7805_04276(PF11833)
59931.WH7805_12318(PF04983)
59931.WH7805_02912PF03742not used
59931.WH7805_03397(PF03040)
59931.WH7805_11328(PF12095)
59931.WH7805_08261(PF11623)
59931.WH7805_09027(PF01737)
59931.WH7805_13698(PF00504)
59931.WH7805_06936(PF10999)
59931.WH7805_12073(PF02672)
59931.WH7805_02727(PF11360)
59931.WH7805_12093(PF10063)
59931.WH7805_01010PF05019
59931.WH7805_05026PF02005
59931.WH7805_05021(PF08041)not used
59931.WH7805_03877(PF06799)
59931.WH7805_06436(PF02427)
59931.WH7805_12933(PF08855)
59931.WH7805_13683(PF01701)not used
59931.WH7805_13663(PF11267)
59931.WH7805_02647(PF09353)
59931.WH7805_03467(PF05969)not used
59931.WH7805_04496(PF00140)
59931.WH7805_06551(PF05151)not used
59931.WH7805_06086(PF00036)
59931.WH7805_12328(PF00504)not used
59931.WH7805_12323(PF04983)
59931.WH7805_08001(PF01788)
59931.WH7805_11313(PF05421)
59931.WH7805_00255(PF08854)
59931.WH7805_05191(PF00059)
59931.WH7805_06566(PF01405)not used
59931.WH7805_06961(PF12617)
59931.WH7805_06741(PF05996)
59931.WH7805_12138PF00124
59931.WH7805_12683(PF02941)
59931.WH7805_03447(PF04483)
59931.WH7805_07611(PF00737)
59931.WH7805_07341PF00124
59931.WH7805_11078(PF11371)
59931.WH7805_05051PF00124
59931.WH7805_00115(PF00140)
59931.WH7805_12128PF00124
59931.WH7805_01402(PF10013)not used
59931.WH7805_11243(PF11910)
59931.WH7805_11663(PF02943)
59931.WH7805_07626(PF02532)not used
59931.WH7805_07706(PF09366)
59931.WH7805_00560(PF00504)
59931.WH7805_02042(PF11947)
59931.WH7805_07636(PF12600)
59931.WH7805_07811(PF03492)
59931.WH7805_12968(PF11317)
59931.WH7805_14223(PF08847)
59931.WH7805_01227(PF00504)
59931.WH7805_12583(PF11805)
59931.WH7805_12568(PF13759)
59931.WH7805_11463(PF00504)not used
59931.WH7805_01167(PF13924)
59931.WH7805_01232(PF12204)
59931.WH7805_04871PF05019
59931.WH7805_02337(PF05996)
59931.WH7805_04786(PF02529)not used
59931.WH7805_01937(PF07082)
59931.WH7805_06316(PF08853)
59931.WH7805_09949(PF00140)
59931.WH7805_12383(PF11341)
59931.WH7805_02837(PF10693)
59931.WH7805_02162(PF11282)
59931.WH7805_04261(PF12049)
59931.WH7805_00300PF00124
59931.WH7805_00520(PF13911)
59931.WH7805_06676(PF06206)
59931.WH7805_12158(PF02672)
59931.WH7805_09599(PF00140)
59931.WH7805_07676(PF11378)
59931.WH7805_03577(PF10674)
59931.WH7805_00315PF00124
59931.WH7805_03192(PF12527)
59931.WH7805_07996PF02419not used
59931.WH7805_10149(PF01947)
59931.WH7805_06621(PF06206)
59931.WH7805_12633(PF04839)
59931.WH7805_07441(PF04483)
59931.WH7805_07191(PF00223)
59931.WH7805_03692(PF01744)
59931.WH7805_00325PF00124
59931.WH7805_13938(PF00140)
59931.WH7805_05111(PF13759)
59931.WH7805_00500(PF08417)
59931.WH7805_05576(PF00140)
59931.WH7805_06476(PF12899)
59931.WH7805_07186(PF00223)
59931.WH7805_11188PF00124
59931.WH7805_04761(PF14159)
59931.WH7805_05561(PF13355)
59931.WH7805_00045(PF10716)
59931.WH7805_10348PF05019
59931.WH7805_06911(PF14159)

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: YES (FDR = 0.5 %)
  • Functional Type III secretion system: NO (FDR = 12.5 %)
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: NO (FDR = 7.7 %)

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================