Metamenu

Effective results for Acidithiobacillus caldus ATCC 51756 (eggnog40)

Summary

Number of putative secreted proteins: 124
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 17 eukaryotic-like domains, contained in 124 proteins (40 high, 84 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
637389.ACA_1626PF05598 (PF01609)(ER)
637389.ACA_0507PF05598 (PF01609)(ER)
637389.ACA_2694(PF00224)(mitochondrial)
637389.ACA_2542(PF02656)mitochondrial
637389.ACA_2618(PF02322)ER
637389.ACA_2759(PF02656)mitochondrial
637389.ACA_1969(PF02322)ER
637389.ACA_0526(PF02322)ER
637389.ACA_0527(PF01654)(ER)
637389.ACA_1112(PF01654)ER; (ER)
637389.ACA_1111(PF02322)(ER)
637389.ACA_0867(PF02635)ER
637389.ACA_1970(PF01654)ER
637389.ACA_0474(PF01654)(ER)
637389.ACA_2071(PF01654)(ER)
637389.ACA_0689PF05598 (PF01609)
637389.ACA_0688PF05598 (PF01609)
637389.ACA_2300PF12762(ER)
637389.ACA_2197PF12762(ER)
637389.ACA_0771PF05598 (PF01609)
637389.ACA_0776PF12762(ER)
637389.ACA_2431PF05598 (PF01609)
637389.ACA_1296PF05598 (PF01609)
637389.ACA_0575PF12762(ER)
637389.ACA_1961PF05598 (PF01609)
637389.ACA_1966(PF01609)mitochondrial; not used
637389.ACA_1962PF05598 (PF01609)
637389.ACA_1814PF05598 (PF01609)
637389.ACA_1810PF05598 (PF01609)
637389.ACA_0601PF12762(ER)
637389.ACA_0605PF12762(ER)
637389.ACA_0263PF05598 (PF01609)
637389.ACA_0275PF05598 (PF01609)
637389.ACA_0461PF12762(ER)
637389.ACA_0881PF05598 (PF01609)
637389.ACA_0880PF05598 (PF01609)
637389.ACA_0649PF05598 (PF01609)
637389.ACA_1975PF05598 (PF01609)
637389.ACA_1909PF05598 (PF01609)
637389.ACA_1691PF05598 (PF01609)
637389.ACA_1271(PF00872)(ER)
637389.ACA_0476(PF02656)(ER)
637389.ACA_2249PF05598 (PF01609)
637389.ACA_2258PF12762(ER)
637389.ACA_2072PF05598 (PF01609)
637389.ACA_1410PF05598 (PF01609)
637389.ACA_2861PF05598
637389.ACA_1791(PF01609)
637389.ACA_2445(PF00872)
637389.ACA_2741(PF00872)
637389.ACA_2695(PF00224)
637389.ACA_1505(PF00872)
637389.ACA_1422(PF01609)
637389.ACA_2205(PF00872)
637389.ACA_2423(PF02635)
637389.ACA_2422(PF01597)
637389.ACA_2424(PF01597)
637389.ACA_1516(PF00872)
637389.ACA_1420(PF00872)
637389.ACA_0171(PF00016)
637389.ACA_2508(PF00862)
637389.ACA_2182PF05598
637389.ACA_2430(PF00872)
637389.ACA_1638(PF00872)
637389.ACA_1636(PF00872)
637389.ACA_1294(PF05686)
637389.ACA_1536(PF00872)
637389.ACA_2229(PF00872)
637389.ACA_1620PF05598
637389.ACA_1570(PF00872)
637389.ACA_0482(PF02656)
637389.ACA_2522(PF02635)
637389.ACA_2098(PF00224)
637389.ACA_1545(PF10544)
637389.ACA_0631(PF04399)
637389.ACA_1383(PF01597)
637389.ACA_0556(PF02635)
637389.ACA_1393(PF00224)
637389.ACA_2765(PF00016)
637389.ACA_1706(PF00872)
637389.ACA_1125(PF04399)
637389.ACA_2617(PF01654)
637389.ACA_0610(PF00872)
637389.ACA_0057(PF00872)
637389.ACA_1006(PF01609)
637389.ACA_1007PF12762
637389.ACA_2757(PF02635)
637389.ACA_2598(PF00872)
637389.ACA_1710(PF01609)
637389.ACA_1131(PF02635)
637389.ACA_0669(PF14721)
637389.ACA_0287(PF00872)
637389.ACA_0265(PF01609)
637389.ACA_2749(PF01597)
637389.ACA_2742PF05598
637389.ACA_1583(PF02635)
637389.ACA_0072(PF01609)
637389.ACA_0073PF05598
637389.ACA_2351PF05598
637389.ACA_1441(PF02635)
637389.ACA_2648(PF00872)
637389.ACA_0865(PF00872)
637389.ACA_0864(PF00872)
637389.ACA_0869(PF02656)
637389.ACA_1026(PF01609)
637389.ACA_1027PF02037
637389.ACA_0884(PF00872)
637389.ACA_0640(PF02635)
637389.ACA_2015(PF00016)
637389.ACA_0509(PF10544)
637389.ACA_1272(PF00872)
637389.ACA_0475(PF02322)
637389.ACA_0473(PF00872)
637389.ACA_0094(PF00872)
637389.ACA_0091(PF02635)
637389.ACA_0250(PF01609)
637389.ACA_0652(PF00872)
637389.ACA_0651(PF00872)
637389.ACA_1868PF05598
637389.ACA_0405(PF00872)
637389.ACA_0404(PF01609)
637389.ACA_1324(PF01609)
637389.ACA_2070(PF02322)
637389.ACA_1323PF05598

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: YES (FDR = 0.5 %)
  • Functional Type III secretion system: NO (FDR = 12.5 %)
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: NO (FDR = 7.7 %)

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================