Metamenu

Effective results for Methylophaga thiooxydans DMS010 (eggnog40)

Summary

Number of putative secreted proteins: 69
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 16 eukaryotic-like domains, contained in 69 proteins (15 high, 54 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
637616.MDMS009_1804(PF13519)ER
637616.MDMS009_1935(PF13519)ER
637616.MDMS009_202(PF09834)(mitochondrial)
637616.MDMS009_1784(PF03924)ER
637616.MDMS009_876(PF03924)(ER)
637616.MDMS009_614(PF00303)(mitochondrial)
637616.MDMS009_2196(PF01152)ER
637616.MDMS009_1438(PF13519)ER
637616.MDMS009_1430(PF13519)ER
637616.MDMS009_199(PF01152)ER
637616.MDMS009_768(PF05694)(ER); ER
637616.MDMS009_2095(PF13519)ER
637616.MDMS009_2707(PF03924)ER
637616.MDMS009_1131(PF00717)ER
637616.MDMS009_710PF06390 (PF13401)
637616.MDMS009_2422(PF06249)(ER)
637616.MDMS009_2844(PF09834)(ER); not used
637616.MDMS009_1021(PF00717)
637616.MDMS009_459(PF01786)
637616.MDMS009_333PF13481
637616.MDMS009_2584(PF00717)
637616.MDMS009_597(PF00303)
637616.MDMS009_587(PF13401)
637616.MDMS009_2931PF13481
637616.MDMS009_1225(PF00717)
637616.MDMS009_1574(PF03924)
637616.MDMS009_1681(PF00717)
637616.MDMS009_106(PF01152)
637616.MDMS009_105(PF00862)
637616.MDMS009_211(PF05694)
637616.MDMS009_214(PF01152)
637616.MDMS009_913PF13481
637616.MDMS009_2(PF10013)not used
637616.MDMS009_462(PF03959)
637616.MDMS009_2493PF13481
637616.MDMS009_2495PF13481
637616.MDMS009_2314PF13481
637616.MDMS009_648(PF00303)
637616.MDMS009_3014(PF00717)
637616.MDMS009_1159(PF13401)
637616.MDMS009_477(PF13401)
637616.MDMS009_1090PF13481
637616.MDMS009_2541(PF13519)
637616.MDMS009_243(PF03924)
637616.MDMS009_245(PF13519)
637616.MDMS009_1533(PF13519)
637616.MDMS009_2573PF13481
637616.MDMS009_1325(PF13401)
637616.MDMS009_1188(PF00717)
637616.MDMS009_535PF13481
637616.MDMS009_758PF00961
637616.MDMS009_839(PF13401)
637616.MDMS009_2340(PF00717)
637616.MDMS009_2506(PF00717)
637616.MDMS009_351(PF13401)
637616.MDMS009_179(PF06249)
637616.MDMS009_1660PF13481
637616.MDMS009_1018PF13481
637616.MDMS009_1127PF13481
637616.MDMS009_577(PF00717)
637616.MDMS009_892(PF00717)
637616.MDMS009_1268(PF00717)
637616.MDMS009_1266PF13481
637616.MDMS009_1133(PF00717)
637616.MDMS009_1643(PF13401)
637616.MDMS009_1035(PF13401)
637616.MDMS009_2473(PF13401)
637616.MDMS009_225(PF01152)
637616.MDMS009_949(PF13401)

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: YES (FDR = 0.5 %)
  • Functional Type III secretion system: NO (FDR = 12.5 %)
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: NO (FDR = 7.7 %)

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================