Effective results for Thermovibrio ammonificans HB-1 (eggnog40)

Summary

Number of putative secreted proteins: 17
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 13 eukaryotic-like domains, contained in 17 proteins (3 high, 14 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
648996.Theam_1670(PF03537)ER
648996.Theam_1248(PF03537)ER
648996.Theam_0765(PF04423)mitochondrial
648996.Theam_0809(PF03537)ER
648996.Theam_1353(PF02516)ER
648996.Theam_0622(PF07998)(ER)
648996.Theam_0620(PF03266)(mitochondrial)
648996.Theam_0167(PF09511)
648996.Theam_1390PF04670
648996.Theam_0113(PF00025)
648996.Theam_1187(PF04098)
648996.Theam_1572(PF01142)
648996.Theam_1509(PF01142)
648996.Theam_1022(PF16114)
648996.Theam_0696PF01920not used
648996.Theam_0697PF02996
648996.Theam_1530(PF01142)

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: YES (FDR = 0.5 %)
  • Functional Type III secretion system: NO (FDR = 12.5 %)
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: NO (FDR = 7.7 %)

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================