Metamenu

Effective results for Frankia symbiont of Datisca glomerata (eggnog40)

Summary

Number of putative secreted proteins: 222
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 24 eukaryotic-like domains, contained in 222 proteins (171 high, 51 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
656024.FsymDg_1665PF00665 PF13276(mitochondrial)
656024.FsymDg_1984PF00665 PF01527 PF13276
656024.FsymDg_1681PF00665 PF01527 PF13276
656024.FsymDg_2579PF00665 PF01527 PF13276
656024.FsymDg_0126PF00665 PF01527 PF13276
656024.FsymDg_2370(PF03015)(ER)
656024.FsymDg_1543(PF07250)(ER)
656024.FsymDg_1830(PF13676)(mitochondrial)
656024.FsymDg_1048PF00665 PF01527 PF13276
656024.FsymDg_1558PF00665 PF01527 PF13276
656024.FsymDg_0202PF00665 PF01527 PF13276
656024.FsymDg_1965PF00665 PF01527 PF13276
656024.FsymDg_1366PF00665 PF01527 PF13276
656024.FsymDg_2306PF00665 PF01527 PF13276
656024.FsymDg_2238PF00665 PF01527 PF13276
656024.FsymDg_4125PF00665 PF01527 PF13276
656024.FsymDg_1979PF00665 PF01527 PF13276
656024.FsymDg_2448PF00665 PF01527 PF13276
656024.FsymDg_1017(PF13676)(ER)
656024.FsymDg_0517(PF02026)ER
656024.FsymDg_0761PF00665 PF01527 PF13276
656024.FsymDg_1740PF00665 PF01527 PF13276
656024.FsymDg_2202PF00665 PF01527 PF13276
656024.FsymDg_2452PF00665 PF01527 PF13276
656024.FsymDg_4215PF00665 PF01527 PF13276
656024.FsymDg_2107PF00665 PF01527 PF13276
656024.FsymDg_2105PF00665 PF01527 PF13276
656024.FsymDg_1469PF00665 PF01527 PF13276
656024.FsymDg_2667PF00665 PF01527 PF13276
656024.FsymDg_0536PF00665 PF01527 PF13276
656024.FsymDg_2864PF00665 PF01527 PF13276
656024.FsymDg_1723PF00665 PF01527 PF13276
656024.FsymDg_4154PF00665 PF01527 PF13276
656024.FsymDg_2900PF00665 PF01527 PF13276
656024.FsymDg_0395(PF13350)(mitochondrial)
656024.FsymDg_0397PF00665 PF01527 PF13276
656024.FsymDg_0065PF00665 PF01527 PF13276
656024.FsymDg_0094PF00665 PF01527 PF13276
656024.FsymDg_1389PF00665 PF01527 PF13276
656024.FsymDg_1254PF00665 PF01527 PF13276
656024.FsymDg_1135(PF13676)(mitochondrial)
656024.FsymDg_2727PF00665 PF01527 PF13276
656024.FsymDg_3394PF00665 PF01527 PF13276
656024.FsymDg_0059PF00665 PF01527 PF13276
656024.FsymDg_2757PF00665 PF01527 PF13276
656024.FsymDg_2838PF00665 PF01527 PF13276
656024.FsymDg_0450PF00665 PF01527 PF13276
656024.FsymDg_4036PF00665 PF01527 PF13276
656024.FsymDg_3239PF00665 PF01527 PF13276
656024.FsymDg_2297PF00665 PF01527 PF13276
656024.FsymDg_2294PF00665 PF01527 PF13276
656024.FsymDg_1262PF00665 PF01527 PF13276
656024.FsymDg_1671PF00665mitochondrial; (mitochondrial)
656024.FsymDg_1182PF00665 PF01527 PF13276
656024.FsymDg_0105PF00665 PF01527 PF13276
656024.FsymDg_1985PF00665 PF13276
656024.FsymDg_1682PF13358 PF13565
656024.FsymDg_0484PF13358 PF13565
656024.FsymDg_2408PF13358 PF13565
656024.FsymDg_2407PF13358 PF13565
656024.FsymDg_2405PF13358 PF13565
656024.FsymDg_0555PF13358 PF13565
656024.FsymDg_4334PF13358 PF13565
656024.FsymDg_4246PF13358 PF13565
656024.FsymDg_2375PF13358 PF13565
656024.FsymDg_1837PF13358 PF13565
656024.FsymDg_1832(PF08357) (PF13676)
656024.FsymDg_1236PF13358 PF13565
656024.FsymDg_0793PF13358 PF13565
656024.FsymDg_2363PF00665 PF13276
656024.FsymDg_2090PF00665 PF13276
656024.FsymDg_0371PF13358 PF13565
656024.FsymDg_3410PF13358 PF13565
656024.FsymDg_3578PF13358 PF13565
656024.FsymDg_0140(PF13676)(mitochondrial)
656024.FsymDg_1760PF13358 PF13565
656024.FsymDg_0216PF13358 PF13565
656024.FsymDg_2133PF13358 PF13565
656024.FsymDg_2046PF13358 PF13565
656024.FsymDg_1363PF00665 PF13276
656024.FsymDg_0681PF13358 PF13565
656024.FsymDg_0139PF13358 PF13565
656024.FsymDg_3082PF00665 PF13276
656024.FsymDg_3522PF00665 PF13276
656024.FsymDg_2450PF13358 PF13565
656024.FsymDg_0759PF13358 PF13565
656024.FsymDg_4430PF13358 PF13565
656024.FsymDg_1752PF13358 PF13565
656024.FsymDg_2424PF13358 PF13565
656024.FsymDg_2109PF13358 PF13565
656024.FsymDg_3620PF13358 PF13565
656024.FsymDg_1927PF13358 PF13565
656024.FsymDg_2484PF13358 PF13565
656024.FsymDg_1726PF00665 PF13276
656024.FsymDg_4532PF13358 PF13565
656024.FsymDg_4152PF13358 PF13565
656024.FsymDg_2679PF13358 PF13565
656024.FsymDg_2678PF13358 PF13565
656024.FsymDg_2674PF13358 PF13565
656024.FsymDg_3874PF13358 PF13565
656024.FsymDg_2873PF13358 PF13565
656024.FsymDg_1600PF13358 PF13565
656024.FsymDg_4525PF13358 PF13565
656024.FsymDg_1429PF13358 PF13565
656024.FsymDg_1932PF13358 PF13565
656024.FsymDg_2640PF00665 PF13276
656024.FsymDg_0073PF13358 PF13565
656024.FsymDg_2399PF13358 PF13565
656024.FsymDg_2737PF00665 PF13276
656024.FsymDg_1386PF00665 PF13276
656024.FsymDg_0474PF13358 PF13565
656024.FsymDg_3498PF13358 PF13565
656024.FsymDg_0283PF13358 PF13565
656024.FsymDg_3664PF13358 PF13565
656024.FsymDg_1391PF13358 PF13565
656024.FsymDg_3712PF13358 PF13565
656024.FsymDg_0442PF13358 PF13565
656024.FsymDg_1423PF00665 PF13276
656024.FsymDg_4414PF13358 PF13565
656024.FsymDg_1654PF00665 PF13276
656024.FsymDg_4060PF08213(mitochondrial); not used
656024.FsymDg_3241PF00665 PF13276
656024.FsymDg_1893PF13358 PF13565
656024.FsymDg_4297PF13358 PF13565
656024.FsymDg_4296PF13358 PF13565
656024.FsymDg_0111PF13358 PF13565
656024.FsymDg_0339PF00665 PF13276
656024.FsymDg_3349PF13358 PF13565
656024.FsymDg_1260PF00665 PF13276
656024.FsymDg_1186PF13358 PF13565
656024.FsymDg_1986PF01527
656024.FsymDg_1981(PF13676)
656024.FsymDg_1216PF03050
656024.FsymDg_1217(PF01609)
656024.FsymDg_1666(PF01348)
656024.FsymDg_1663PF01527
656024.FsymDg_1660PF13565
656024.FsymDg_4124PF03050
656024.FsymDg_0133(PF01609)
656024.FsymDg_0829(PF13676)
656024.FsymDg_0557(PF01609)
656024.FsymDg_0634PF03050
656024.FsymDg_4332(PF09445)
656024.FsymDg_2088PF03050
656024.FsymDg_1836(PF01609)
656024.FsymDg_3565(PF13350)
656024.FsymDg_1943PF03050
656024.FsymDg_2960(PF01609)
656024.FsymDg_0794PF03050
656024.FsymDg_2364PF01527
656024.FsymDg_2098(PF01609)
656024.FsymDg_2782(PF01609)
656024.FsymDg_2786PF03050
656024.FsymDg_4262(PF00755)
656024.FsymDg_4445(PF03803)
656024.FsymDg_1564(PF03988)
656024.FsymDg_3547(PF01609)
656024.FsymDg_1364PF01527
656024.FsymDg_0561(PF01609)
656024.FsymDg_4301PF03050
656024.FsymDg_4053PF03050
656024.FsymDg_1570(PF03988)
656024.FsymDg_0222PF03050
656024.FsymDg_0992(PF01609)
656024.FsymDg_2844PF03050
656024.FsymDg_4195PF03050
656024.FsymDg_3152(PF04455)
656024.FsymDg_3089PF03050
656024.FsymDg_3081PF01527
656024.FsymDg_3083PF03050
656024.FsymDg_2208(PF00036)
656024.FsymDg_0340PF01527
656024.FsymDg_0234PF03050
656024.FsymDg_3423(PF13676)
656024.FsymDg_3523PF01527
656024.FsymDg_4439(PF01609)
656024.FsymDg_1596(PF13350)
656024.FsymDg_2425PF03050
656024.FsymDg_3532PF03050
656024.FsymDg_2465PF03050
656024.FsymDg_1727PF01527
656024.FsymDg_4153(PF01609)
656024.FsymDg_3445(PF13350)
656024.FsymDg_3500(PF03988)
656024.FsymDg_0485PF03050
656024.FsymDg_4233PF03050
656024.FsymDg_4415PF03050
656024.FsymDg_1422PF01527
656024.FsymDg_4147PF13358
656024.FsymDg_0068PF03050
656024.FsymDg_2018PF13565
656024.FsymDg_0384(PF01847)
656024.FsymDg_1347(PF13676)
656024.FsymDg_2736PF01527
656024.FsymDg_1385PF01527
656024.FsymDg_1252PF03050
656024.FsymDg_1255(PF14216)
656024.FsymDg_1259PF01527
656024.FsymDg_1130PF03050
656024.FsymDg_0470(PF01609)
656024.FsymDg_1626(PF13676)
656024.FsymDg_2723(PF01609)
656024.FsymDg_2726PF03050
656024.FsymDg_1390PF13565
656024.FsymDg_1655PF01527
656024.FsymDg_0706PF03050
656024.FsymDg_1659PF03050
656024.FsymDg_4116(PF01609)
656024.FsymDg_3488(PF13676)
656024.FsymDg_3240PF01527
656024.FsymDg_1872PF03050
656024.FsymDg_2639PF01527
656024.FsymDg_2836PF03050
656024.FsymDg_1648PF03050
656024.FsymDg_1510(PF01947)
656024.FsymDg_0024(PF13676)
656024.FsymDg_0847(PF13350)
656024.FsymDg_0594PF03050
656024.FsymDg_0593(PF13676)
656024.FsymDg_1261(PF13676)
656024.FsymDg_0104(PF01348)
656024.FsymDg_2359(PF01609)

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: NO (FDR = 0.5 %)
  • Functional Type III secretion system: N.D.
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: N.D.

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================