Effective results for Eubacterium siraeum 70/3 (eggnog40)

Summary

Number of putative secreted proteins: 39
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 14 eukaryotic-like domains, contained in 39 proteins (2 high, 37 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
657319.EUS_07490(PF02156)ER
657319.EUS_07800(PF00150)ER
657319.EUS_07530(PF06541)ER
657319.EUS_21570(PF02156)ER
657319.EUS_00270(PF00150)ER
657319.EUS_11000(PF00150)ER
657319.EUS_17890(PF00150)ER
657319.EUS_04000(PF06541)ER
657319.EUS_18990(PF06541)ER
657319.EUS_28120(PF00150)ER
657319.EUS_08060(PF00150)(mitochondrial); (ER)
657319.EUS_16610(PF00150)ER
657319.EUS_23360(PF03415)mitochondrial
657319.EUS_23350(PF03415)(ER)
657319.EUS_07010(PF00150)
657319.EUS_07020(PF00150)
657319.EUS_04280(PF00150)
657319.EUS_23620(PF13155)
657319.EUS_24030(PF02938)
657319.EUS_25340(PF02229)
657319.EUS_18650PF12873
657319.EUS_18130(PF00150)
657319.EUS_02580(PF14311)
657319.EUS_14880(PF02156)
657319.EUS_15850(PF13155)
657319.EUS_16400(PF13155)
657319.EUS_25940(PF09359)
657319.EUS_17100(PF16804)
657319.EUS_13590(PF02057)
657319.EUS_18960(PF09359)
657319.EUS_02970(PF02229)
657319.EUS_02090(PF02156)
657319.EUS_10620(PF13151)
657319.EUS_13050(PF13155)
657319.EUS_02790(PF13155)
657319.EUS_12390(PF02156)
657319.EUS_12370(PF02938)
657319.EUS_15710(PF01991)
657319.EUS_18630PF12873

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: NO (FDR = 0.5 %)
  • Functional Type III secretion system: N.D.
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: N.D.

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================