Effective results for Streptococcus dysgalactiae subsp. dysgalactiae ATCC 27957 (eggnog40)
Summary
Number of putative secreted proteins: 159
- Predicted by T4SEpre: 85
- Predicted by EffectiveELD: 14 eukaryotic-like domains, contained in 88 proteins (26 high, 62 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): (Type IV)
Protein based results
Putative secreted proteins (weak evidence indicated by parentheses)
Protein | EffectiveT3 | EffectiveCCBD | T4SEpre | EffectiveELD | Predotar |
---|---|---|---|---|---|
663952.SDD27957_02600 | (PF07650) | (mitochondrial); mitochondrial | |||
663952.SDD27957_02735 | PF13276 (PF00665) (PF01527) | ||||
663952.SDD27957_08550 | + | mitochondrial | |||
663952.SDD27957_09730 | (PF05257) | ER | |||
663952.SDD27957_05495 | (PF06280) | (ER) | |||
663952.SDD27957_03895 | (PF00665) | (mitochondrial) | |||
663952.SDD27957_01830 | + | ER | |||
663952.SDD27957_03465 | + | ER | |||
663952.SDD27957_00390 | (PF00344) | mitochondrial | |||
663952.SDD27957_08020 | + | ER; (ER) | |||
663952.SDD27957_00020 | + | mitochondrial; (mitochondrial) | |||
663952.SDD27957_08875 | + | ER | |||
663952.SDD27957_01875 | + | ER | |||
663952.SDD27957_01265 | + | ER | |||
663952.SDD27957_04930 | + | (ER); ER | |||
663952.SDD27957_09405 | + | ER | |||
663952.SDD27957_00130 | (PF05257) | ER | |||
663952.SDD27957_02515 | + | ER | |||
663952.SDD27957_02650 | PF13276 (PF00665) (PF01527) | ||||
663952.SDD27957_09925 | + | ER | |||
663952.SDD27957_01250 | (PF03714) | (mitochondrial); (ER) | |||
663952.SDD27957_00890 | (PF00344) | ER | |||
663952.SDD27957_02790 | PF13276 (PF00665) (PF01527) | ||||
663952.SDD27957_06965 | + | ER | |||
663952.SDD27957_07305 | PF12855 | (mitochondrial) | |||
663952.SDD27957_06940 | (PF01527) | (mitochondrial) | |||
663952.SDD27957_01130 | + | ER | |||
663952.SDD27957_07990 | + | (mitochondrial) | |||
663952.SDD27957_08995 | (PF00665) | mitochondrial | |||
663952.SDD27957_04950 | + | (ER) | |||
663952.SDD27957_09370 | + | (mitochondrial) | |||
663952.SDD27957_06595 | PF13276 (PF00665) | ||||
663952.SDD27957_06590 | (PF01527) | (mitochondrial); not used | |||
663952.SDD27957_06935 | PF13276 (PF00665) | ||||
663952.SDD27957_02260 | PF13276 (PF00665) | ||||
663952.SDD27957_02280 | + | (plastid) | |||
663952.SDD27957_05485 | PF13276 (PF00665) | ||||
663952.SDD27957_05480 | PF13276 (PF00665) | ||||
663952.SDD27957_11180 | (PF01527) | (mitochondrial) | |||
663952.SDD27957_11185 | PF13276 (PF00665) | ||||
663952.SDD27957_05100 | (PF01527) | (mitochondrial) | |||
663952.SDD27957_02630 | PF13276 (PF00665) | ||||
663952.SDD27957_09850 | + | (mitochondrial) | |||
663952.SDD27957_09880 | PF13276 (PF00665) | ||||
663952.SDD27957_04810 | (PF01527) | (mitochondrial) | |||
663952.SDD27957_04815 | PF13276 (PF00665) | ||||
663952.SDD27957_02980 | PF13276 (PF00665) | ||||
663952.SDD27957_04000 | + | (ER) | |||
663952.SDD27957_08470 | PF13276 (PF00665) | ||||
663952.SDD27957_11150 | + | (ER) | |||
663952.SDD27957_00120 | PF13276 (PF00665) | ||||
663952.SDD27957_08865 | PF13276 (PF00665) | ||||
663952.SDD27957_01080 | PF13276 (PF00665) | ||||
663952.SDD27957_05770 | (PF01527) | (mitochondrial) | |||
663952.SDD27957_09755 | PF13276 (PF00665) | ||||
663952.SDD27957_10745 | (PF02971) (PF07837) | ||||
663952.SDD27957_05095 | PF13276 (PF00665) | ||||
663952.SDD27957_05765 | PF13276 (PF00665) | ||||
663952.SDD27957_02305 | (PF01527) | (mitochondrial) | |||
663952.SDD27957_02300 | PF13276 (PF00665) | ||||
663952.SDD27957_06530 | PF13276 (PF00665) | ||||
663952.SDD27957_05935 | PF13276 (PF00665) | ||||
663952.SDD27957_02255 | (PF01527) | (mitochondrial) | |||
663952.SDD27957_02245 | (PF06280) | (ER) | |||
663952.SDD27957_05865 | + | ||||
663952.SDD27957_10905 | + | ||||
663952.SDD27957_01115 | + | ||||
663952.SDD27957_02295 | (PF00665) | ||||
663952.SDD27957_07690 | + | ||||
663952.SDD27957_05475 | (PF01527) | ||||
663952.SDD27957_02720 | + | ||||
663952.SDD27957_04980 | + | ||||
663952.SDD27957_10840 | + | ||||
663952.SDD27957_08145 | + | ||||
663952.SDD27957_00295 | + | ||||
663952.SDD27957_01205 | + | ||||
663952.SDD27957_02865 | (PF00665) | ||||
663952.SDD27957_01365 | + | ||||
663952.SDD27957_02590 | + | ||||
663952.SDD27957_07420 | + | ||||
663952.SDD27957_02605 | (PF07650) | not used | |||
663952.SDD27957_07645 | + | ||||
663952.SDD27957_03880 | + | ||||
663952.SDD27957_01550 | + | ||||
663952.SDD27957_02925 | (PF06280) | ||||
663952.SDD27957_06120 | + | ||||
663952.SDD27957_05490 | (PF01527) | ||||
663952.SDD27957_11200 | + | ||||
663952.SDD27957_03545 | (PF03714) | ||||
663952.SDD27957_00385 | + | ||||
663952.SDD27957_05620 | + | ||||
663952.SDD27957_02625 | (PF01527) | ||||
663952.SDD27957_07665 | + | ||||
663952.SDD27957_09995 | (PF00665) | ||||
663952.SDD27957_10790 | + | ||||
663952.SDD27957_01705 | (PF00665) | ||||
663952.SDD27957_05025 | + | ||||
663952.SDD27957_05730 | + | ||||
663952.SDD27957_02550 | + | ||||
663952.SDD27957_09460 | + | ||||
663952.SDD27957_10810 | + | ||||
663952.SDD27957_09885 | (PF01527) | ||||
663952.SDD27957_10145 | (PF01527) | ||||
663952.SDD27957_08870 | (PF01527) | ||||
663952.SDD27957_07105 | + | ||||
663952.SDD27957_00220 | + | ||||
663952.SDD27957_03900 | (PF01527) | ||||
663952.SDD27957_00125 | (PF01527) | ||||
663952.SDD27957_00900 | + | ||||
663952.SDD27957_02975 | (PF01527) | ||||
663952.SDD27957_08910 | (PF02502) | ||||
663952.SDD27957_08915 | (PF02502) | ||||
663952.SDD27957_06060 | + | ||||
663952.SDD27957_08465 | (PF01527) | ||||
663952.SDD27957_09220 | + | ||||
663952.SDD27957_07830 | + | ||||
663952.SDD27957_03930 | (PF00665) | ||||
663952.SDD27957_03910 | (PF00665) | ||||
663952.SDD27957_09300 | + | ||||
663952.SDD27957_11175 | PF13276 | ||||
663952.SDD27957_11170 | (PF00665) | ||||
663952.SDD27957_08325 | (PF05257) | ||||
663952.SDD27957_09125 | (PF12949) | ||||
663952.SDD27957_00675 | + | ||||
663952.SDD27957_00855 | + | ||||
663952.SDD27957_01075 | (PF01527) | ||||
663952.SDD27957_05175 | (PF02502) | ||||
663952.SDD27957_05170 | (PF02502) | ||||
663952.SDD27957_06680 | + | ||||
663952.SDD27957_07150 | (PF00665) | ||||
663952.SDD27957_00685 | (PF01527) | ||||
663952.SDD27957_03260 | (PF02502) | ||||
663952.SDD27957_00205 | (PF05257) | ||||
663952.SDD27957_04360 | (PF05257) | ||||
663952.SDD27957_01420 | + | ||||
663952.SDD27957_05235 | + | ||||
663952.SDD27957_06535 | (PF01527) | ||||
663952.SDD27957_05890 | + | ||||
663952.SDD27957_05940 | (PF01527) | ||||
663952.SDD27957_10080 | + | ||||
663952.SDD27957_04795 | (PF00665) | ||||
663952.SDD27957_04790 | (PF01527) | ||||
663952.SDD27957_07555 | PF13276 | ||||
663952.SDD27957_07550 | (PF01527) | ||||
663952.SDD27957_10470 | (PF05495) | ||||
663952.SDD27957_01430 | + | ||||
663952.SDD27957_00260 | + | ||||
663952.SDD27957_09000 | (PF01527) | ||||
663952.SDD27957_06235 | + | ||||
663952.SDD27957_02490 | (PF00665) | ||||
663952.SDD27957_07165 | (PF05257) | ||||
663952.SDD27957_07765 | + | ||||
663952.SDD27957_07760 | + | ||||
663952.SDD27957_00415 | + | ||||
663952.SDD27957_09760 | (PF01527) | ||||
663952.SDD27957_06485 | + | ||||
663952.SDD27957_00320 | (PF07650) | ||||
663952.SDD27957_05680 | + | ||||
663952.SDD27957_01175 | + |
Detailed merged results for each protein sequence
- Detailed merged results as table (merge_results.html)
- Detailed merged results as tab delimited file (merge_results.csv)
Individual results for each protein sequence
- T4SEpre bpbAac predictions (T4SEpre_bpbAac_FinalResult.csv)
- T4SEpre psAac predictions (T4SEpre_psAac_FinalResult.csv)
- EffectiveELD predictions (PROTEINS.ELD.TXT)
- Predotar predictions using animal/human model (Predotar_output_modelANIMAL.TXT)
- Predotar predictions using plant model (Predotar_output_modelPLANT.TXT)
Genome based results
Summary
- Gram negative: NO (FDR = 0.5 %)
- Functional Type III secretion system: N.D.
- Functional Type IV secretion system: YES (FDR = 7.2 %)
Estimated copy number = 0 (0/0 KEGG proteins)
- Functional Type VI secretion system: N.D.
Individual results for each secretion system
Parameters:
==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================
Estimated copy number = 0 (0/0 KEGG proteins)