Effective results for Oceanithermus profundus DSM 14977 (eggnog40)

Summary

Number of putative secreted proteins: 11
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 10 eukaryotic-like domains, contained in 11 proteins (3 high, 8 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
670487.Ocepr_1790(PF01875)mitochondrial; (mitochondrial)
670487.Ocepr_0200(PF01457)mitochondrial
670487.Ocepr_0556PF03351ER
670487.Ocepr_0601(PF04930)
670487.Ocepr_1783(PF08271)not used
670487.Ocepr_0437PF16575
670487.Ocepr_1082(PF01875)
670487.Ocepr_1794PF02807
670487.Ocepr_1464(PF01991)
670487.Ocepr_1644(PF00025)
670487.Ocepr_0383(PF09445)

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: YES (FDR = 0.5 %)
  • Functional Type III secretion system: NO (FDR = 12.5 %)
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: NO (FDR = 7.7 %)

Individual results for each secretion system

Parameters:

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EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================