Effective results for Pseudonocardia dioxanivorans CB1190 (eggnog40)

Summary

Number of putative secreted proteins: 503
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 62 eukaryotic-like domains, contained in 503 proteins (18 high, 485 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
675635.Psed_3910(PF00479) (PF02781)(ER)
675635.Psed_1055(PF13936) (PF00665)mitochondrial
675635.Psed_3500(PF00479) (PF02781)(ER)
675635.Psed_5482(PF13936) (PF00665)mitochondrial
675635.Psed_6344(PF13936) (PF00665)mitochondrial
675635.Psed_5054(PF00941) (PF03450)(ER)
675635.Psed_6474(PF00941) (PF03450)(ER)
675635.Psed_6247(PF13936) (PF00665)mitochondrial
675635.Psed_5931(PF00941) (PF03450)(ER)
675635.Psed_5842(PF13936) (PF00665)mitochondrial
675635.Psed_5841(PF00479) (PF02781)mitochondrial
675635.Psed_6299(PF13191)mitochondrial
675635.Psed_1461(PF02738) (PF01315)(plastid)
675635.Psed_0072(PF12697)(ER)
675635.Psed_1976(PF01186)ER
675635.Psed_4295(PF12697)(ER)
675635.Psed_6620(PF12697)ER
675635.Psed_6196(PF02577)mitochondrial
675635.Psed_6531(PF02515)(ER)
675635.Psed_1720(PF13936) (PF00665)(mitochondrial)
675635.Psed_5542(PF13191)(mitochondrial)
675635.Psed_2399(PF13641)(ER)
675635.Psed_0866(PF01695)mitochondrial
675635.Psed_0574(PF13641)ER
675635.Psed_0571(PF13641)ER
675635.Psed_0182(PF13641)ER; (ER)
675635.Psed_1589(PF12483)ER
675635.Psed_6054PF06574ER
675635.Psed_4912(PF13191)mitochondrial
675635.Psed_6282(PF13191)(mitochondrial)
675635.Psed_6288(PF02679)(mitochondrial)
675635.Psed_6467(PF00296)ER; (ER)
675635.Psed_6121(PF13367)(mitochondrial)
675635.Psed_5368(PF12697)(mitochondrial)
675635.Psed_6109(PF12697)(ER)
675635.Psed_2360(PF02738) (PF01315)(mitochondrial)
675635.Psed_0061(PF13936) (PF00665)(mitochondrial)
675635.Psed_2116(PF02900)ER; (ER)
675635.Psed_5933(PF02738) (PF01315)(ER)
675635.Psed_5325(PF13641)(ER)
675635.Psed_2560(PF01799)(mitochondrial)
675635.Psed_2563(PF07110)mitochondrial
675635.Psed_2098(PF02882) (PF00763)(mitochondrial)
675635.Psed_2500(PF00941) (PF03450)(ER)
675635.Psed_3207(PF02515)ER
675635.Psed_4853(PF13936) (PF00665)(mitochondrial)
675635.Psed_4858(PF01695)(mitochondrial)
675635.Psed_4859(PF00665)(ER)
675635.Psed_3245(PF13191)(mitochondrial)
675635.Psed_4040(PF12697)(mitochondrial)
675635.Psed_1275(PF04248)(mitochondrial)
675635.Psed_6239(PF00274)(mitochondrial)
675635.Psed_6436(PF13191)mitochondrial
675635.Psed_6597(PF02738)(mitochondrial); (ER)
675635.Psed_3978(PF02738) (PF01315)(mitochondrial)
675635.Psed_6047(PF13936) (PF00665)(mitochondrial)
675635.Psed_3137(PF00296)ER
675635.Psed_6439(PF12697)mitochondrial
675635.Psed_3114(PF09348)mitochondrial
675635.Psed_3448(PF13367)(mitochondrial); plastid
675635.Psed_5214(PF13641)(ER)
675635.Psed_4923(PF02882) (PF00763)
675635.Psed_2458(PF05378) (PF01968)
675635.Psed_2280(PF00775) (PF04444)
675635.Psed_4134(PF00296)(plastid)
675635.Psed_4969(PF00775) (PF04444)
675635.Psed_2498(PF02738) (PF01315)
675635.Psed_4637(PF05378) (PF01968)
675635.Psed_2561(PF00941) (PF03450)
675635.Psed_2658(PF02738) (PF01315)
675635.Psed_3749(PF02728) (PF01179)
675635.Psed_4212PF11531(ER)
675635.Psed_2359(PF00941) (PF03450)
675635.Psed_0217(PF02900)(plastid)
675635.Psed_2107(PF02219)(ER)
675635.Psed_4820(PF06925)(mitochondrial)
675635.Psed_2169(PF12697)(ER)
675635.Psed_5675(PF02738) (PF01315)
675635.Psed_5674(PF00941) (PF03450)
675635.Psed_5314(PF02882) (PF00763)
675635.Psed_5699(PF02738) (PF01315)
675635.Psed_5697(PF00941) (PF03450)
675635.Psed_1999(PF13191)(ER)
675635.Psed_2559(PF02738) (PF01315)
675635.Psed_3684(PF06925)(mitochondrial)
675635.Psed_1763(PF00941) (PF03450)
675635.Psed_1760(PF02738) (PF01315)
675635.Psed_5506(PF00296)(ER)
675635.Psed_5504(PF05378) (PF01968)
675635.Psed_6533(PF02900)(plastid)
675635.Psed_3232(PF05378) (PF01968)
675635.Psed_2252(PF02738) (PF01315)
675635.Psed_2250(PF00941) (PF03450)
675635.Psed_5112(PF04248)(mitochondrial)
675635.Psed_4182(PF12697)(plastid)
675635.Psed_5056(PF02738) (PF01315)
675635.Psed_6051(PF01425)plastid
675635.Psed_1136(PF10009)(mitochondrial)
675635.Psed_3085(PF05378) (PF01968)
675635.Psed_5472(PF13191)(mitochondrial)
675635.Psed_4434(PF00296)(ER)
675635.Psed_1153(PF05378) (PF01968)
675635.Psed_2953(PF05378) (PF01968)
675635.Psed_2959(PF00941) (PF03450)
675635.Psed_6473(PF02738) (PF01315)
675635.Psed_2191(PF00296) (PF12697)
675635.Psed_4666PF06574(mitochondrial)
675635.Psed_6140(PF02738) (PF01315)
675635.Psed_6469(PF05378) (PF01968)
675635.Psed_2669(PF05378) (PF01968)
675635.Psed_3755(PF02738) (PF01315)
675635.Psed_3756(PF00941) (PF03450)
675635.Psed_0268(PF02738)(ER)
675635.Psed_5911(PF05378) (PF01968)
675635.Psed_5913(PF05378) (PF01968)
675635.Psed_0206(PF13641)(mitochondrial)
675635.Psed_2652(PF02738) (PF01315)
675635.Psed_2656(PF00941) (PF03450)
675635.Psed_2654(PF00941) (PF03450)
675635.Psed_6426(PF02728) (PF01179)
675635.Psed_3555(PF05378) (PF01968)
675635.Psed_4021(PF02882) (PF00763)
675635.Psed_6337(PF05378) (PF01968)
675635.Psed_0978(PF00296)mitochondrial
675635.Psed_6379(PF00775) (PF04444)
675635.Psed_1082(PF12697)(mitochondrial)
675635.Psed_6216(PF00941) (PF03450)
675635.Psed_6218(PF02738) (PF01315)
675635.Psed_2225(PF00775) (PF04444)
675635.Psed_2961(PF02738) (PF01315)
675635.Psed_6472(PF02738) (PF01315)
675635.Psed_6470(PF00941) (PF03450)
675635.Psed_3409(PF00479) (PF02781)
675635.Psed_3093(PF00775) (PF04444)
675635.Psed_3098PF06574(plastid)
675635.Psed_1809(PF02515)(ER)
675635.Psed_6065(PF00775) (PF04444)
675635.Psed_0764(PF00775) (PF04444)
675635.Psed_6420(PF00479) (PF02781)
675635.Psed_4926(PF00296)
675635.Psed_4928(PF00296)
675635.Psed_2452(PF01425)
675635.Psed_1333(PF00296)
675635.Psed_3913(PF13191)
675635.Psed_3915(PF02371)
675635.Psed_3464(PF01695)
675635.Psed_6179(PF02371)
675635.Psed_5930(PF01799)
675635.Psed_4444(PF12697)
675635.Psed_2457(PF02538)
675635.Psed_2453(PF02371)
675635.Psed_2613(PF00296)
675635.Psed_2611(PF13191)
675635.Psed_4941(PF02515)
675635.Psed_2479(PF00296)
675635.Psed_3703(PF12697)
675635.Psed_3702(PF01717)
675635.Psed_3706(PF12697)
675635.Psed_1396(PF12697)
675635.Psed_1460(PF01799)
675635.Psed_5284(PF12697)
675635.Psed_4131(PF00296)
675635.Psed_4138(PF02515)
675635.Psed_5060(PF00296)
675635.Psed_0541(PF07110)
675635.Psed_0254(PF02627)
675635.Psed_2670(PF02538)
675635.Psed_2678(PF02577)
675635.Psed_4968(PF02515)
675635.Psed_2499(PF01799)
675635.Psed_2497(PF04199)
675635.Psed_4638(PF02538)
675635.Psed_3721(PF12697)
675635.Psed_0136(PF02852)
675635.Psed_5055(PF01799)
675635.Psed_4096(PF00296)
675635.Psed_1442PF00237
675635.Psed_1916(PF00755)
675635.Psed_6139(PF00941)
675635.Psed_6138(PF01799)
675635.Psed_4153(PF02515)
675635.Psed_4152(PF01425)
675635.Psed_2653(PF01799)
675635.Psed_5582(PF04248)
675635.Psed_5630PF08213not used
675635.Psed_3744(PF02627)
675635.Psed_3742(PF02515)
675635.Psed_3741(PF04199)
675635.Psed_4213(PF12697)
675635.Psed_4214(PF02515)
675635.Psed_2623(PF00296)
675635.Psed_2193(PF00296)
675635.Psed_2195(PF00296)
675635.Psed_2358(PF01799)
675635.Psed_4174(PF02515)
675635.Psed_0214(PF12697)
675635.Psed_6287(PF02852)
675635.Psed_1033(PF01425)
675635.Psed_1032PF03243
675635.Psed_2104(PF02219)
675635.Psed_2102(PF01717)
675635.Psed_1628(PF13191)
675635.Psed_1624(PF02852)
675635.Psed_0535(PF01969)
675635.Psed_5339(PF00665)
675635.Psed_4111(PF02515)
675635.Psed_2378(PF00296)
675635.Psed_2374(PF00296)
675635.Psed_2167(PF00296)
675635.Psed_5676(PF01799)
675635.Psed_2785(PF02219)
675635.Psed_1201(PF02371)
675635.Psed_5316PF01184
675635.Psed_2576(PF02627)
675635.Psed_3049(PF03069)
675635.Psed_1787(PF00296)
675635.Psed_1783(PF01717)
675635.Psed_1560(PF02371)
675635.Psed_1565(PF00775)
675635.Psed_1566(PF00775)
675635.Psed_3554(PF01425)
675635.Psed_5698(PF01799)
675635.Psed_4019(PF02148)
675635.Psed_4279(PF10009)
675635.Psed_1194(PF01425)
675635.Psed_1196(PF01988)
675635.Psed_2555(PF02627)
675635.Psed_4865(PF06925)
675635.Psed_2333(PF13641)
675635.Psed_3685(PF06925)
675635.Psed_0016(PF00665)
675635.Psed_0017(PF01695)
675635.Psed_0909(PF00665)
675635.Psed_0903(PF00296)
675635.Psed_1762(PF01799)
675635.Psed_5503(PF02538)
675635.Psed_5505(PF02515)
675635.Psed_3212(PF02515)
675635.Psed_3216(PF00296)
675635.Psed_3218(PF00296)
675635.Psed_4074(PF12697)
675635.Psed_6455(PF12697)
675635.Psed_4290(PF12697)
675635.Psed_4297PF01085
675635.Psed_2533(PF01717)
675635.Psed_2538(PF00296)
675635.Psed_4120(PF01988)
675635.Psed_4433(PF00296)
675635.Psed_1744(PF00296)
675635.Psed_0296(PF02515)
675635.Psed_1521(PF02627)
675635.Psed_2275PF06574
675635.Psed_5898(PF00296)
675635.Psed_6604(PF13191)
675635.Psed_2517(PF00296)
675635.Psed_2322(PF02515)
675635.Psed_3233(PF02538)
675635.Psed_1095(PF12697)
675635.Psed_2251(PF01799)
675635.Psed_3250(PF00665)
675635.Psed_0622(PF12697)
675635.Psed_0624(PF00296)
675635.Psed_1289(PF02371)
675635.Psed_4882PF01184
675635.Psed_4884(PF03069)
675635.Psed_3625(PF12697)
675635.Psed_4394(PF12697)
675635.Psed_2931(PF02371)
675635.Psed_4570(PF00296)
675635.Psed_1706(PF13191)
675635.Psed_0975(PF16155)
675635.Psed_5113(PF00296)
675635.Psed_2238(PF00296)
675635.Psed_2237(PF04199)
675635.Psed_6039(PF02371)
675635.Psed_6036(PF02900)
675635.Psed_6037(PF00296)
675635.Psed_0867(PF00665)
675635.Psed_5059(PF12697)
675635.Psed_2210(PF01025)
675635.Psed_6208(PF02515)
675635.Psed_6203(PF00296)
675635.Psed_6202(PF00296)
675635.Psed_6205(PF01425)
675635.Psed_4517(PF00296)
675635.Psed_0188(PF13641)
675635.Psed_0187(PF13641)
675635.Psed_6440(PF01717)
675635.Psed_2215(PF02148)
675635.Psed_3161(PF02577)
675635.Psed_5838(PF00296)
675635.Psed_5837(PF00296)
675635.Psed_4697(PF12697)
675635.Psed_5246(PF02627)
675635.Psed_2689(PF00296)
675635.Psed_2682(PF12697)
675635.Psed_4681(PF00775)
675635.Psed_1367(PF00296)
675635.Psed_6465(PF12697)
675635.Psed_3418(PF00162)
675635.Psed_0823(PF12697)
675635.Psed_1154(PF02538)
675635.Psed_3316(PF13191)
675635.Psed_3313(PF02371)
675635.Psed_2954(PF02538)
675635.Psed_2401(PF02371)
675635.Psed_4336(PF02371)
675635.Psed_6242(PF00274)
675635.Psed_6248(PF00274)
675635.Psed_0809PF00237
675635.Psed_0773(PF02627)
675635.Psed_2420(PF02219)
675635.Psed_4319(PF13191)
675635.Psed_4315(PF13191)
675635.Psed_5991(PF01425)
675635.Psed_3455(PF02148)
675635.Psed_3101(PF03069)
675635.Psed_2853(PF01717)
675635.Psed_5858(PF01425)
675635.Psed_5856(PF02627)
675635.Psed_5850(PF13191)
675635.Psed_5853(PF02371)
675635.Psed_2622(PF00296)
675635.Psed_2624(PF04199)
675635.Psed_4935(PF00296)
675635.Psed_2440(PF12697)
675635.Psed_3719(PF04199)
675635.Psed_4599(PF02515)
675635.Psed_3906(PF00296)
675635.Psed_1419(PF01425)
675635.Psed_6146(PF12697)
675635.Psed_4129(PF12697)
675635.Psed_2466(PF02900)
675635.Psed_3730(PF02627)
675635.Psed_5950(PF01425)
675635.Psed_0123(PF02627)
675635.Psed_0126(PF01717)
675635.Psed_0125(PF00296)
675635.Psed_1651(PF02627)
675635.Psed_1475(PF00296)
675635.Psed_1473(PF00296)
675635.Psed_1470(PF00296)
675635.Psed_5381(PF01425)
675635.Psed_5382(PF03069)
675635.Psed_6460(PF02627)
675635.Psed_2666(PF02515)
675635.Psed_3754(PF01799)
675635.Psed_5974(PF14832)
675635.Psed_4087(PF00296)
675635.Psed_1457(PF12697)
675635.Psed_6481(PF02515)
675635.Psed_4167(PF12697)
675635.Psed_0269(PF01799)
675635.Psed_0261(PF02627)
675635.Psed_0262(PF02515)
675635.Psed_0267(PF00296)
675635.Psed_1453(PF01425)
675635.Psed_5914(PF02538)
675635.Psed_1616(PF01969)
675635.Psed_1619(PF02679)
675635.Psed_5340(PF01695)
675635.Psed_5345(PF02219)
675635.Psed_3184(PF01425)
675635.Psed_0062(PF02371)
675635.Psed_1558(PF01988)
675635.Psed_2657(PF01799)
675635.Psed_3799(PF03069)
675635.Psed_3790(PF00296)
675635.Psed_4220(PF00296)
675635.Psed_4225(PF00296)
675635.Psed_1949(PF02515)
675635.Psed_5061(PF12697)
675635.Psed_2832(PF13816)
675635.Psed_4814(PF01695)
675635.Psed_4813(PF00665)
675635.Psed_1371(PF00296)
675635.Psed_1797(PF00296)
675635.Psed_1795(PF01425)
675635.Psed_1574(PF02627)
675635.Psed_1573(PF08326)
675635.Psed_2174(PF00296)
675635.Psed_3556(PF02538)
675635.Psed_6080(PF02371)
675635.Psed_4023(PF13191)
675635.Psed_6332(PF00296)
675635.Psed_6336(PF02538)
675635.Psed_4244(PF12697)
675635.Psed_1966(PF02515)
675635.Psed_5305(PF00296)
675635.Psed_1211(PF02371)
675635.Psed_4875(PF01988)
675635.Psed_2951(PF02515)
675635.Psed_0027(PF01695)
675635.Psed_0028(PF00665)
675635.Psed_4490(PF04199)
675635.Psed_0244(PF02900)
675635.Psed_2155(PF01695)
675635.Psed_2156(PF00665)
675635.Psed_3208(PF02515)
675635.Psed_6354(PF02371)
675635.Psed_0515(PF02515)
675635.Psed_3944(PF00665)
675635.Psed_0498(PF02371)
675635.Psed_0914(PF00296)
675635.Psed_0910(PF01695)
675635.Psed_1537(PF01425)
675635.Psed_1539(PF01786)
675635.Psed_4284(PF02900)
675635.Psed_3484(PF01025)
675635.Psed_5889(PF13191)
675635.Psed_1257(PF01695)
675635.Psed_1256(PF00665)
675635.Psed_1369(PF00296)
675635.Psed_6615(PF02627)
675635.Psed_2058(PF02515)
675635.Psed_2508(PF01717)
675635.Psed_2509(PF04199)
675635.Psed_2506(PF02852)
675635.Psed_2056(PF00296)
675635.Psed_6404(PF13191)
675635.Psed_1363(PF02515)
675635.Psed_0289PF01184
675635.Psed_2261(PF12697)
675635.Psed_3248(PF01425)
675635.Psed_3249(PF01695)
675635.Psed_3241(PF01425)
675635.Psed_4041(PF00296)
675635.Psed_6396(PF01425)
675635.Psed_3813(PF00296)
675635.Psed_4906(PF02515)
675635.Psed_6554(PF01025)
675635.Psed_1277(PF02852)
675635.Psed_1271(PF04248)
675635.Psed_1279(PF02627)
675635.Psed_3031(PF01425)
675635.Psed_6234(PF00296)
675635.Psed_6236(PF00162)
675635.Psed_2921(PF10009)
675635.Psed_4565(PF02852)
675635.Psed_5578(PF13191)
675635.Psed_2243(PF02627)
675635.Psed_6001(PF00296)
675635.Psed_6007(PF03069)
675635.Psed_1296(PF02627)
675635.Psed_1294(PF02852)
675635.Psed_2014(PF12697)
675635.Psed_5292(PF12697)
675635.Psed_6215(PF01799)
675635.Psed_1843(PF10009)
675635.Psed_1590(PF02515)
675635.Psed_5105(PF00296)
675635.Psed_5833(PF04248)
675635.Psed_6024PF01184
675635.Psed_3171(PF04248)
675635.Psed_3175(PF12697)
675635.Psed_0679(PF13367)
675635.Psed_4195(PF12697)
675635.Psed_4199(PF04199)
675635.Psed_4198(PF02515)
675635.Psed_6596(PF01799)
675635.Psed_3341(PF00296)
675635.Psed_4694(PF02852)
675635.Psed_2969(PF13191)
675635.Psed_2964(PF01425)
675635.Psed_2960(PF01799)
675635.Psed_1827(PF07110)
675635.Psed_1823(PF00296)
675635.Psed_0332(PF01425)
675635.Psed_5126(PF00296)
675635.Psed_1317(PF02852)
675635.Psed_1314PF03243
675635.Psed_6475(PF01799)
675635.Psed_1313PF03243
675635.Psed_6471(PF01799)
675635.Psed_6479(PF00296)
675635.Psed_6042(PF00665)
675635.Psed_6041(PF01695)
675635.Psed_2200(PF00296)
675635.Psed_5460(PF02515)
675635.Psed_3151(PF00296)
675635.Psed_4642(PF01425)
675635.Psed_4641(PF01425)
675635.Psed_3360(PF00296)
675635.Psed_3364(PF00296)
675635.Psed_4644(PF01425)
675635.Psed_4327(PF12697)
675635.Psed_4322(PF02852)
675635.Psed_6259(PF00296)
675635.Psed_1801(PF00296)
675635.Psed_1804(PF02371)
675635.Psed_1379(PF00296)
675635.Psed_5863(PF02627)
675635.Psed_1147(PF01695)
675635.Psed_1146(PF00665)
675635.Psed_1145(PF02371)
675635.Psed_5273(PF02852)
675635.Psed_3308(PF02852)
675635.Psed_1420PF01184
675635.Psed_1350(PF00296)
675635.Psed_5424PF00237
675635.Psed_1347(PF04199)
675635.Psed_3112(PF09348)
675635.Psed_1349(PF02515)

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: NO (FDR = 0.5 %)
  • Functional Type III secretion system: N.D.
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: N.D.

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================