Effective results for Citromicrobium bathyomarinum JL354 (eggnog40)

Summary

Number of putative secreted proteins: 31
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 15 eukaryotic-like domains, contained in 31 proteins (2 high, 29 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
685035.CbatJ_010100006086(PF03209)ER
685035.CbatJ_010100006096(PF03073)ER
685035.CbatJ_010100006111(PF00124)ER
685035.CbatJ_010100006036(PF03209)ER
685035.CbatJ_010100011741PF10520ER
685035.CbatJ_010100015555(PF00394)mitochondrial
685035.CbatJ_010100008784(PF03073)ER
685035.CbatJ_010100009521(PF06455)ER
685035.CbatJ_010100002990(PF03073)ER; mitochondrial
685035.CbatJ_010100016047(PF00394)not used
685035.CbatJ_010100013086(PF13661)
685035.CbatJ_010100008499(PF00124)
685035.CbatJ_010100013091(PF13759)
685035.CbatJ_010100008494(PF00124)
685035.CbatJ_010100016062(PF00394)
685035.CbatJ_010100013448(PF00394)
685035.CbatJ_010100000240(PF02933)
685035.CbatJ_010100015997(PF00394)not used
685035.CbatJ_010100010171(PF05019)
685035.CbatJ_010100010756PF01231
685035.CbatJ_010100006106(PF00124)
685035.CbatJ_010100009936(PF13759)
685035.CbatJ_010100005285(PF14832)
685035.CbatJ_010100002130(PF10013)not used
685035.CbatJ_010100003445(PF13759)
685035.CbatJ_010100003335(PF05019)
685035.CbatJ_010100016157(PF00394)not used
685035.CbatJ_010100015545(PF00305)
685035.CbatJ_010100016002(PF00394)not used
685035.CbatJ_010100013528(PF13872)not used
685035.CbatJ_010100016302(PF13872)not used

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: YES (FDR = 0.5 %)
  • Functional Type III secretion system: NO (FDR = 12.5 %)
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: NO (FDR = 7.7 %)

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================