Effective results for Pseudothermotoga thermarum DSM 5069 (eggnog40)

Summary

Number of putative secreted proteins: 27
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 13 eukaryotic-like domains, contained in 27 proteins (3 high, 24 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
688269.Theth_1869PF15905ER
688269.Theth_1829(PF01729)(mitochondrial)
688269.Theth_1504PF06552ER
688269.Theth_0102(PF01257)(mitochondrial)
688269.Theth_1423(PF10142)ER
688269.Theth_0981(PF07837) (PF02971)
688269.Theth_0991(PF07892)
688269.Theth_0478(PF01729)
688269.Theth_1642(PF01729)
688269.Theth_0666(PF02540)
688269.Theth_1720(PF02540)
688269.Theth_0711(PF02540)
688269.Theth_0932(PF01637)
688269.Theth_0016(PF02540)
688269.Theth_1192(PF01637)
688269.Theth_1345PF10516
688269.Theth_0363(PF02540)
688269.Theth_1405(PF11969)
688269.Theth_0563(PF03266)
688269.Theth_1567(PF01257)
688269.Theth_1565(PF01257)
688269.Theth_1568(PF01257)
688269.Theth_0164(PF01637)
688269.Theth_1366(PF07892)
688269.Theth_0099(PF01257)
688269.Theth_0098(PF01257)
688269.Theth_0097(PF01257)

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: YES (FDR = 0.5 %)
  • Functional Type III secretion system: NO (FDR = 12.5 %)
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: NO (FDR = 7.7 %)

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================