Effective results for Corynebacterium diphtheriae PW8 (eggnog40)

Summary

Number of putative secreted proteins: 39
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 12 eukaryotic-like domains, contained in 39 proteins (5 high, 34 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

Protein	EffectiveT3	EffectiveCCBD	T4SEpre	EffectiveELD	Predotar
698964.CDPW8_1915				(PF12821)	(mitochondrial)
698964.CDPW8_1914				(PF12821)	mitochondrial
698964.CDPW8_0082				(PF11070)	ER
698964.CDPW8_0058				(PF03596)	ER
698964.CDPW8_1000				(PF03596)	ER
698964.CDPW8_0476				PF00673 PF00281
698964.CDPW8_2045				(PF02371)	(mitochondrial)
698964.CDPW8_1528				PF00673 PF00281
698964.CDPW8_1892				(PF02371)
698964.CDPW8_0696				(PF02371)
698964.CDPW8_1274				(PF02371)
698964.CDPW8_1932				(PF12821)
698964.CDPW8_0061				(PF02371)
698964.CDPW8_0475				(PF17136)
698964.CDPW8_0474				PF00238
698964.CDPW8_0865				(PF01195)
698964.CDPW8_0867				(PF01195)
698964.CDPW8_2065				(PF02371)
698964.CDPW8_1596				(PF02371)
698964.CDPW8_2279				(PF04326)
698964.CDPW8_2278				(PF04326)
698964.CDPW8_1811				(PF02371)
698964.CDPW8_1818				(PF08354)
698964.CDPW8_1367				(PF02371)
698964.CDPW8_1361				(PF02371)
698964.CDPW8_0087				(PF04326)
698964.CDPW8_2264				(PF04326)
698964.CDPW8_0995				(PF02371)
698964.CDPW8_1953				(PF02371)
698964.CDPW8_0715				(PF02371)
698964.CDPW8_1530				PF00238
698964.CDPW8_0396				PF08213	not used
698964.CDPW8_1448				(PF02371)
698964.CDPW8_1529				(PF17136)
698964.CDPW8_1992				(PF02371)
698964.CDPW8_0737				(PF02371)
698964.CDPW8_2181				(PF02371)
698964.CDPW8_0234				(PF02371)
698964.CDPW8_0228				(PF02371)	not used

Detailed merged results for each protein sequence

• Detailed merged results as table (merge_results.html)
• Detailed merged results as tab delimited file (merge_results.csv)

Individual results for each protein sequence

• EffectiveELD predictions (PROTEINS.ELD.TXT)
• Predotar predictions using animal/human model (Predotar_output_modelANIMAL.TXT)
• Predotar predictions using plant model (Predotar_output_modelPLANT.TXT)

Genome based results

Summary

• Gram negative: NO (FDR = 0.5 %)
• Functional Type III secretion system: N.D.
• Functional Type IV secretion system: NO (FDR = 7.2 %)
• Functional Type VI secretion system: N.D.

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================