Effective results for Sulfuricurvum kujiense DSM 16994 (eggnog40)

Summary

Number of putative secreted proteins: 21
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 12 eukaryotic-like domains, contained in 21 proteins (2 high, 19 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
709032.Sulku_2413(PF02516)(ER)
709032.Sulku_0331(PF03054)
709032.Sulku_1693(PF07693)
709032.Sulku_1208(PF11074)
709032.Sulku_0258(PF07693)
709032.Sulku_0482(PF03054)
709032.Sulku_1534(PF01106)
709032.Sulku_1319(PF01871)
709032.Sulku_1005(PF01106)
709032.Sulku_0666(PF16114)
709032.Sulku_0065(PF12513)
709032.Sulku_1815PF08312
709032.Sulku_1807PF04981
709032.Sulku_1274(PF00162)
709032.Sulku_0181(PF01871)
709032.Sulku_0730(PF02943)
709032.Sulku_0080(PF03054)
709032.Sulku_2521(PF01106)
709032.Sulku_1888(PF07693)
709032.Sulku_0288(PF00162)
709032.Sulku_2291(PF01106)

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: YES (FDR = 0.5 %)
  • Functional Type III secretion system: NO (FDR = 12.5 %)
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: NO (FDR = 7.7 %)

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================