Effective results for Asticcacaulis biprosthecum C19 (eggnog40)
Summary
Number of putative secreted proteins: 217
- Predicted by T4SEpre: 87
- Predicted by EffectiveELD: 34 eukaryotic-like domains, contained in 147 proteins (24 high, 123 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): Type IV
Protein based results
Putative secreted proteins (weak evidence indicated by parentheses)
| Protein | EffectiveT3 | EffectiveCCBD | T4SEpre | EffectiveELD | Predotar |
|---|---|---|---|---|---|
| 715226.ABI_11110 | (PF04616) (PF10435) (PF13363) (PF13364) | ER | |||
| 715226.ABI_17670 | + | (PF16757) | ER; mitochondrial | ||
| 715226.ABI_37010 | + | (PF08238) | ER | ||
| 715226.ABI_43830 | (PF17137) (PF07691) | ER | |||
| 715226.ABI_25190 | PF04820 | (mitochondrial) | |||
| 715226.ABI_44910 | + | ER | |||
| 715226.ABI_17680 | (PF03629) | ER | |||
| 715226.ABI_17410 | + | mitochondrial; (mitochondrial) | |||
| 715226.ABI_44340 | (PF17137) | (mitochondrial) | |||
| 715226.ABI_31990 | + | ER | |||
| 715226.ABI_15740 | (PF04616) | ER | |||
| 715226.ABI_19720 | (PF06964) | ER | |||
| 715226.ABI_24740 | + | ER | |||
| 715226.ABI_01550 | PF04820 | (ER) | |||
| 715226.ABI_45620 | (PF00150) | ER | |||
| 715226.ABI_21680 | (PF13364) (PF03629) | (plastid) | |||
| 715226.ABI_30200 | (PF00150) | ER | |||
| 715226.ABI_00720 | + | ER | |||
| 715226.ABI_17640 | + | (mitochondrial); mitochondrial | |||
| 715226.ABI_36320 | (PF06455) | ER | |||
| 715226.ABI_36520 | (PF08238) | ER | |||
| 715226.ABI_02130 | + | ER | |||
| 715226.ABI_15720 | (PF00150) | ER | |||
| 715226.ABI_06320 | + | ER | |||
| 715226.ABI_42060 | (PF07691) | ER | |||
| 715226.ABI_01590 | + | ER | |||
| 715226.ABI_30870 | (PF04616) | ER | |||
| 715226.ABI_15660 | + | ER | |||
| 715226.ABI_26560 | + | ER | |||
| 715226.ABI_33660 | + | ER | |||
| 715226.ABI_23160 | (PF04616) | ER | |||
| 715226.ABI_32750 | (PF16317) | mitochondrial; (ER) | |||
| 715226.ABI_36940 | (PF08238) | ER | |||
| 715226.ABI_40250 | (PF08238) | ER | |||
| 715226.ABI_43540 | + | ER | |||
| 715226.ABI_28760 | (PF16757) | (mitochondrial) | |||
| 715226.ABI_09410 | + | mitochondrial | |||
| 715226.ABI_14730 | (PF13204) | ER | |||
| 715226.ABI_33260 | + | ER | |||
| 715226.ABI_12140 | (PF08238) | (mitochondrial); (plastid) | |||
| 715226.ABI_36030 | (PF00150) | ER | |||
| 715226.ABI_10880 | (PF08238) | ER | |||
| 715226.ABI_09790 | + | ER | |||
| 715226.ABI_09660 | + | ER | |||
| 715226.ABI_20180 | (PF04230) | ER | |||
| 715226.ABI_45030 | (PF08238) | ER | |||
| 715226.ABI_08200 | (PF00135) | ER; (ER) | |||
| 715226.ABI_12150 | (PF08238) | ER | |||
| 715226.ABI_28550 | (PF00135) | mitochondrial | |||
| 715226.ABI_19960 | PF04820 | (ER); (mitochondrial) | |||
| 715226.ABI_18600 | + | (ER) | |||
| 715226.ABI_07500 | (PF08238) | ER | |||
| 715226.ABI_14240 | (PF17137) | ER | |||
| 715226.ABI_23040 | (PF08238) | mitochondrial; (mitochondrial) | |||
| 715226.ABI_33200 | + | ER | |||
| 715226.ABI_25590 | + | ER; (ER) | |||
| 715226.ABI_17970 | (PF00135) | mitochondrial | |||
| 715226.ABI_10400 | (PF03629) | ER | |||
| 715226.ABI_47230 | (PF08238) | ER | |||
| 715226.ABI_13260 | (PF04616) | (ER) | |||
| 715226.ABI_10690 | + | ER | |||
| 715226.ABI_14260 | + | ER | |||
| 715226.ABI_14190 | (PF04616) | (ER); (mitochondrial) | |||
| 715226.ABI_11250 | + | ER | |||
| 715226.ABI_10510 | (PF04616) | ER | |||
| 715226.ABI_01500 | (PF16499) | ER | |||
| 715226.ABI_16570 | + | ER | |||
| 715226.ABI_45460 | (PF04616) | ER | |||
| 715226.ABI_01340 | (PF04616) | ER | |||
| 715226.ABI_44410 | PF04820 | (mitochondrial) | |||
| 715226.ABI_07040 | + | ER | |||
| 715226.ABI_44300 | (PF06964) | ER | |||
| 715226.ABI_01990 | (PF16499) | ER | |||
| 715226.ABI_47250 | (PF08238) | ER | |||
| 715226.ABI_15810 | (PF04616) | ER | |||
| 715226.ABI_07740 | (PF04616) | ER | |||
| 715226.ABI_10520 | (PF17137) (PF07691) | mitochondrial | |||
| 715226.ABI_02550 | (PF00135) | ER | |||
| 715226.ABI_41570 | + | ER | |||
| 715226.ABI_44290 | (PF11578) | ER | |||
| 715226.ABI_44330 | (PF07224) | ER | |||
| 715226.ABI_12090 | (PF08238) | ER | |||
| 715226.ABI_02720 | (PF00135) | ER | |||
| 715226.ABI_10530 | (PF04616) | ER | |||
| 715226.ABI_45400 | (PF15979) | ER | |||
| 715226.ABI_02540 | (PF13204) | ER; (ER) | |||
| 715226.ABI_21070 | (PF06964) | ER | |||
| 715226.ABI_24350 | (PF00135) | ER | |||
| 715226.ABI_29460 | + | ER | |||
| 715226.ABI_44320 | (PF07691) | ER | |||
| 715226.ABI_30800 | (PF04616) | ER; (ER) | |||
| 715226.ABI_34250 | + | ER | |||
| 715226.ABI_42770 | (PF00135) | ER | |||
| 715226.ABI_12890 | + | ER | |||
| 715226.ABI_24290 | (PF11578) | ER | |||
| 715226.ABI_46510 | (PF16499) | ER | |||
| 715226.ABI_26500 | (PF02685) | ER | |||
| 715226.ABI_11470 | (PF09224) | (ER) | |||
| 715226.ABI_47480 | (PF15979) | ER | |||
| 715226.ABI_30710 | (PF03629) | ER | |||
| 715226.ABI_34660 | + | (mitochondrial) | |||
| 715226.ABI_05250 | + | (PF13366) | |||
| 715226.ABI_27500 | + | (plastid) | |||
| 715226.ABI_23210 | (PF11918) | (ER) | |||
| 715226.ABI_46600 | + | (plastid) | |||
| 715226.ABI_28960 | + | (mitochondrial) | |||
| 715226.ABI_15870 | + | (mitochondrial) | |||
| 715226.ABI_04890 | + | (plastid) | |||
| 715226.ABI_18710 | (PF13621) | plastid | |||
| 715226.ABI_13190 | (PF16499) | (mitochondrial) | |||
| 715226.ABI_26580 | (PF00150) | plastid | |||
| 715226.ABI_28640 | + | (mitochondrial) | |||
| 715226.ABI_05530 | (PF12200) | (mitochondrial) | |||
| 715226.ABI_13240 | (PF06964) | (mitochondrial) | |||
| 715226.ABI_46070 | (PF04616) | (ER) | |||
| 715226.ABI_16370 | + | (ER) | |||
| 715226.ABI_38810 | (PF13366) | ||||
| 715226.ABI_13690 | (PF00150) | ||||
| 715226.ABI_31280 | + | ||||
| 715226.ABI_05860 | PF04820 | ||||
| 715226.ABI_05460 | + | ||||
| 715226.ABI_03390 | PF04820 | ||||
| 715226.ABI_45360 | (PF13621) | ||||
| 715226.ABI_35740 | + | ||||
| 715226.ABI_30210 | PF04820 | ||||
| 715226.ABI_33960 | (PF04616) | ||||
| 715226.ABI_44370 | + | ||||
| 715226.ABI_13960 | + | ||||
| 715226.ABI_15730 | PF04820 | ||||
| 715226.ABI_44390 | PF04820 | ||||
| 715226.ABI_18840 | (PF08238) | ||||
| 715226.ABI_25200 | (PF13621) | ||||
| 715226.ABI_24000 | + | ||||
| 715226.ABI_21140 | PF04820 | ||||
| 715226.ABI_41500 | (PF16401) | ||||
| 715226.ABI_11730 | + | ||||
| 715226.ABI_47540 | + | ||||
| 715226.ABI_34690 | + | ||||
| 715226.ABI_03190 | + | ||||
| 715226.ABI_46390 | (PF13621) | ||||
| 715226.ABI_04180 | + | ||||
| 715226.ABI_09300 | (PF08238) | ||||
| 715226.ABI_20170 | (PF04230) | ||||
| 715226.ABI_04360 | (PF13366) | ||||
| 715226.ABI_15080 | + | ||||
| 715226.ABI_30260 | (PF13621) | ||||
| 715226.ABI_11400 | + | ||||
| 715226.ABI_22320 | + | ||||
| 715226.ABI_12710 | + | ||||
| 715226.ABI_28990 | (PF04616) | ||||
| 715226.ABI_20680 | PF04820 | ||||
| 715226.ABI_20190 | (PF04230) | ||||
| 715226.ABI_05540 | (PF12200) | ||||
| 715226.ABI_18880 | (PF08238) | ||||
| 715226.ABI_45480 | PF00362 | ||||
| 715226.ABI_30240 | PF04820 | ||||
| 715226.ABI_46110 | + | ||||
| 715226.ABI_01270 | PF04820 | ||||
| 715226.ABI_20210 | (PF04230) | ||||
| 715226.ABI_27240 | + | ||||
| 715226.ABI_20690 | PF04820 | ||||
| 715226.ABI_20980 | PF04820 | ||||
| 715226.ABI_11350 | + | ||||
| 715226.ABI_44270 | (PF16499) | ||||
| 715226.ABI_25290 | (PF16401) | ||||
| 715226.ABI_30500 | (PF07691) | ||||
| 715226.ABI_47510 | (PF04616) | ||||
| 715226.ABI_25180 | PF04820 | ||||
| 715226.ABI_16000 | + | ||||
| 715226.ABI_20230 | (PF04230) | ||||
| 715226.ABI_12910 | + | ||||
| 715226.ABI_39150 | + | ||||
| 715226.ABI_05620 | + | ||||
| 715226.ABI_14180 | (PF00150) | ||||
| 715226.ABI_22490 | (PF13366) | ||||
| 715226.ABI_15830 | PF04820 | ||||
| 715226.ABI_02440 | (PF02685) | ||||
| 715226.ABI_45870 | (PF00139) | ||||
| 715226.ABI_20080 | (PF04577) | ||||
| 715226.ABI_21620 | + | ||||
| 715226.ABI_26830 | (PF02685) | ||||
| 715226.ABI_34290 | + | ||||
| 715226.ABI_41750 | (PF13661) | ||||
| 715226.ABI_44400 | PF04820 | ||||
| 715226.ABI_40080 | (PF00150) | ||||
| 715226.ABI_44310 | (PF06964) | ||||
| 715226.ABI_03610 | (PF04577) | ||||
| 715226.ABI_11810 | (PF10013) | not used | |||
| 715226.ABI_02450 | (PF02685) | ||||
| 715226.ABI_19800 | PF04820 | ||||
| 715226.ABI_20250 | (PF04577) | ||||
| 715226.ABI_26440 | + | ||||
| 715226.ABI_03280 | (PF13366) | ||||
| 715226.ABI_01970 | PF04820 | ||||
| 715226.ABI_19810 | (PF13621) | ||||
| 715226.ABI_36600 | + | ||||
| 715226.ABI_04100 | PF04820 | ||||
| 715226.ABI_44420 | PF04820 | ||||
| 715226.ABI_00430 | + | ||||
| 715226.ABI_28290 | + | ||||
| 715226.ABI_15790 | (PF00150) | ||||
| 715226.ABI_14780 | + | ||||
| 715226.ABI_16320 | + | ||||
| 715226.ABI_37270 | + | ||||
| 715226.ABI_40050 | (PF01457) | ||||
| 715226.ABI_12080 | (PF08238) | ||||
| 715226.ABI_15160 | + | ||||
| 715226.ABI_30230 | PF04820 | ||||
| 715226.ABI_01170 | (PF13621) | ||||
| 715226.ABI_34120 | + | ||||
| 715226.ABI_44740 | (PF04616) | ||||
| 715226.ABI_23240 | (PF13366) | ||||
| 715226.ABI_14220 | (PF00135) | ||||
| 715226.ABI_40060 | (PF00150) | ||||
| 715226.ABI_47260 | (PF08238) | ||||
| 715226.ABI_44000 | (PF11578) | ||||
| 715226.ABI_03360 | (PF04616) |
Detailed merged results for each protein sequence
- Detailed merged results as table (merge_results.html)
- Detailed merged results as tab delimited file (merge_results.csv)
Individual results for each protein sequence
- T4SEpre bpbAac predictions (T4SEpre_bpbAac_FinalResult.csv)
- T4SEpre psAac predictions (T4SEpre_psAac_FinalResult.csv)
- EffectiveELD predictions (PROTEINS.ELD.TXT)
- Predotar predictions using animal/human model (Predotar_output_modelANIMAL.TXT)
- Predotar predictions using plant model (Predotar_output_modelPLANT.TXT)
Genome based results
Summary
- Gram negative: YES (FDR = 0.5 %)
- Functional Type III secretion system: NO (FDR = 12.5 %)
- Functional Type IV secretion system: YES (FDR = 7.2 %)
Estimated copy number = 0.9 (9/10 KEGG proteins)
- Functional Type VI secretion system: NO (FDR = 7.7 %)
Individual results for each secretion system
- List of 100 most important COGs/NOGs for prediction of functional Type III secretion system (T3_top100_COGS.xls)
- List of 100 most important COGs/NOGs for prediction of functional Type IV secretion system (T4_top100_COGS.xls)
- List of 100 most important COGs/NOGs for prediction of functional Type VI secretion system (T6_top100_COGS.xls)
- List of COGs assigned to Type III secretion system in KEGG (T3SS_KEGG_cmp.xls)
- List of COGs assigned to Type IV secretion system in KEGG (T4SS_KEGG_cmp.xls)
- List of COGs assigned to Type VI secretion system in KEGG (T6SS_KEGG_cmp.xls)
Parameters:
==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================
Estimated copy number = 0.9 (9/10 KEGG proteins)
Release announcements
News
Latest publications
Contact
- +43 1 4277 76681
- +43 1 4277 876681
- contact.cube@univie.ac.at
