Effective results for Marinomonas mediterranea MMB-1 (eggnog40)

Summary

Number of putative secreted proteins: 36
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 21 eukaryotic-like domains, contained in 36 proteins (5 high, 31 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): Type VI

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
717774.Marme_1380(PF00909)ER
717774.Marme_0713(PF00059)ER
717774.Marme_3332PF13574(mitochondrial); (plastid)
717774.Marme_2892(PF03662)mitochondrial
717774.Marme_3437(PF00909)(ER)
717774.Marme_2488(PF14532)(ER)
717774.Marme_2017(PF00909)ER
717774.Marme_2754PF04927mitochondrial; not used
717774.Marme_3960(PF00909)(ER)
717774.Marme_1540(PF07653) PF14604
717774.Marme_1827(PF04383)(mitochondrial)
717774.Marme_1787(PF01634)(mitochondrial)
717774.Marme_3923(PF03803)
717774.Marme_2727(PF14532)
717774.Marme_0423(PF01129)
717774.Marme_1730(PF13936)
717774.Marme_0085(PF14336)
717774.Marme_0276(PF16715)
717774.Marme_0273(PF01634)
717774.Marme_3346(PF03102)
717774.Marme_1240(PF09445)
717774.Marme_2510(PF13936)
717774.Marme_1870(PF04383)
717774.Marme_3037(PF13936)
717774.Marme_3962PF12142
717774.Marme_1866(PF13936)
717774.Marme_1857(PF13936)
717774.Marme_0612(PF03102)
717774.Marme_0618(PF03102)
717774.Marme_0928(PF13936)
717774.Marme_3794(PF00026)
717774.Marme_3950(PF01634)
717774.Marme_1318PF01536
717774.Marme_0394(PF00909)
717774.Marme_2679(PF14532)
717774.Marme_4094(PF01947)

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: YES (FDR = 0.5 %)
  • Functional Type III secretion system: NO (FDR = 12.5 %)
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: YES (FDR = 7.7 %)
    Estimated copy number = 1.25 (10/8 KEGG proteins)

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================