Metamenu

Effective results for Sutterella wadsworthensis 3_1_45B (eggnog40)

Summary

Number of putative secreted proteins: 140
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 13 eukaryotic-like domains, contained in 140 proteins (85 high, 55 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
742821.HMPREF9464_00885(PF14698) (PF00206)ER
742821.HMPREF9464_02212(PF00710)ER
742821.HMPREF9464_01542PF00890ER
742821.HMPREF9464_01096PF00890ER
742821.HMPREF9464_00859PF00890mitochondrial; (mitochondrial)
742821.HMPREF9464_00851PF05935ER
742821.HMPREF9464_02221PF12974ER
742821.HMPREF9464_02223PF00890ER
742821.HMPREF9464_02355PF00890ER
742821.HMPREF9464_02357PF05935ER
742821.HMPREF9464_02356PF00890(mitochondrial)
742821.HMPREF9464_02351(PF06472)mitochondrial
742821.HMPREF9464_01086PF00890(mitochondrial); mitochondrial
742821.HMPREF9464_01555PF00890mitochondrial; ER
742821.HMPREF9464_00063PF05935ER
742821.HMPREF9464_00062PF00890ER
742821.HMPREF9464_02348PF05935ER
742821.HMPREF9464_01527PF05935ER
742821.HMPREF9464_01525(PF03797)ER
742821.HMPREF9464_00217PF00890ER; (ER)
742821.HMPREF9464_00211PF05935ER
742821.HMPREF9464_00108PF12974ER
742821.HMPREF9464_00109PF00890ER
742821.HMPREF9464_02247PF00890mitochondrial; (mitochondrial)
742821.HMPREF9464_02246PF12974ER
742821.HMPREF9464_00534PF12974ER
742821.HMPREF9464_00127PF05935mitochondrial
742821.HMPREF9464_01628PF05935mitochondrial; (ER)
742821.HMPREF9464_01448PF05935ER
742821.HMPREF9464_01783PF05935ER
742821.HMPREF9464_01471PF12974ER
742821.HMPREF9464_01473PF00890ER
742821.HMPREF9464_00704(PF00939)mitochondrial; (mitochondrial)
742821.HMPREF9464_00705(PF00939)ER
742821.HMPREF9464_02085PF00890ER
742821.HMPREF9464_01414PF12974ER
742821.HMPREF9464_01412PF00890ER
742821.HMPREF9464_00642PF12974mitochondrial
742821.HMPREF9464_00020PF05935ER
742821.HMPREF9464_00022(PF03797)ER
742821.HMPREF9464_02074(PF03577)ER
742821.HMPREF9464_02073PF00890ER
742821.HMPREF9464_01626PF00890ER
742821.HMPREF9464_01969PF00890ER
742821.HMPREF9464_00501PF00890ER
742821.HMPREF9464_01399PF05935ER
742821.HMPREF9464_01935PF00890mitochondrial; (ER)
742821.HMPREF9464_01933PF12974ER
742821.HMPREF9464_01938(PF00939)ER
742821.HMPREF9464_00532PF00890mitochondrial
742821.HMPREF9464_00143PF00890mitochondrial; (mitochondrial)
742821.HMPREF9464_01010PF12974ER
742821.HMPREF9464_01881(PF00710)ER
742821.HMPREF9464_01230PF00890ER
742821.HMPREF9464_01236PF00890ER
742821.HMPREF9464_01234PF12974ER
742821.HMPREF9464_00635(PF03577)(mitochondrial)
742821.HMPREF9464_01906(PF00209)(ER)
742821.HMPREF9464_00834PF00890mitochondrial; (mitochondrial)
742821.HMPREF9464_02336PF00890(mitochondrial)
742821.HMPREF9464_01133PF00890ER
742821.HMPREF9464_00195PF12974mitochondrial
742821.HMPREF9464_00601PF05935ER
742821.HMPREF9464_00177PF00890ER
742821.HMPREF9464_00172PF12974ER
742821.HMPREF9464_02031PF05935(mitochondrial)
742821.HMPREF9464_02326(PF06472)mitochondrial
742821.HMPREF9464_02323PF00890mitochondrial
742821.HMPREF9464_00769PF05935ER
742821.HMPREF9464_02319(PF06472)ER; mitochondrial
742821.HMPREF9464_01116PF05935ER
742821.HMPREF9464_00150PF05935ER
742821.HMPREF9464_02306(PF00939)ER
742821.HMPREF9464_00090(PF06472)mitochondrial
742821.HMPREF9464_00968(PF03797)(mitochondrial)
742821.HMPREF9464_00144PF00890ER
742821.HMPREF9464_01578(PF03797)ER
742821.HMPREF9464_01571(PF03797)ER
742821.HMPREF9464_00221PF00890mitochondrial; (mitochondrial)
742821.HMPREF9464_00047PF00890ER
742821.HMPREF9464_01891PF00890(plastid)
742821.HMPREF9464_02220PF00890(ER)
742821.HMPREF9464_00061PF00890(mitochondrial)
742821.HMPREF9464_00065(PF03797)(mitochondrial)
742821.HMPREF9464_02161(PF14698) (PF00206)
742821.HMPREF9464_00544(PF14698) (PF00206)
742821.HMPREF9464_02240(PF14698) (PF00206)
742821.HMPREF9464_01474PF00890(mitochondrial)
742821.HMPREF9464_00812PF00890plastid
742821.HMPREF9464_01904(PF00209)(mitochondrial)
742821.HMPREF9464_01102PF00890(mitochondrial)
742821.HMPREF9464_01022(PF14698) (PF00206)
742821.HMPREF9464_00943(PF03797)
742821.HMPREF9464_01159PF12974
742821.HMPREF9464_01151PF00890
742821.HMPREF9464_01089PF00890
742821.HMPREF9464_01082(PF00206)
742821.HMPREF9464_01087PF12974
742821.HMPREF9464_01553PF12974
742821.HMPREF9464_01559PF00890
742821.HMPREF9464_01427(PF13597)
742821.HMPREF9464_00688(PF03577)
742821.HMPREF9464_00110(PF03797)
742821.HMPREF9464_02231(PF01487)
742821.HMPREF9464_00213(PF03797)
742821.HMPREF9464_00078(PF03797)
742821.HMPREF9464_00533(PF01487)
742821.HMPREF9464_01531(PF00209)
742821.HMPREF9464_02251(PF00710)
742821.HMPREF9464_00493PF05935
742821.HMPREF9464_00706PF00890
742821.HMPREF9464_00129PF00890
742821.HMPREF9464_01464(PF00939)
742821.HMPREF9464_02095PF00890
742821.HMPREF9464_02077(PF03797)
742821.HMPREF9464_02277(PF03797)
742821.HMPREF9464_02278(PF03797)
742821.HMPREF9464_01624(PF00206)
742821.HMPREF9464_00811PF12974
742821.HMPREF9464_01937(PF00206)
742821.HMPREF9464_00536PF00890
742821.HMPREF9464_01233PF00890
742821.HMPREF9464_01903(PF00209)
742821.HMPREF9464_01905(PF00209)
742821.HMPREF9464_01428(PF13597)
742821.HMPREF9464_01008PF00890
742821.HMPREF9464_00994PF00890
742821.HMPREF9464_00992(PF00206)
742821.HMPREF9464_00515PF00890
742821.HMPREF9464_02030(PF00206)
742821.HMPREF9464_02328(PF13597)
742821.HMPREF9464_00503(PF03797)
742821.HMPREF9464_00167(PF00710)
742821.HMPREF9464_00174PF00890
742821.HMPREF9464_02312(PF03797)
742821.HMPREF9464_01446(PF03797)
742821.HMPREF9464_01166PF00890
742821.HMPREF9464_01302(PF03797)
742821.HMPREF9464_01173(PF03797)
742821.HMPREF9464_00134(PF00939)

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: YES (FDR = 0.5 %)
  • Functional Type III secretion system: NO (FDR = 12.5 %)
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: NO (FDR = 7.7 %)

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================