Effective results for Streptococcus parauberis NCFD 2020 (eggnog40)

Summary

Number of putative secreted proteins: 96
- Predicted by T4SEpre: 92
- Predicted by EffectiveELD: 10 eukaryotic-like domains, contained in 28 proteins (2 high, 26 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): (Type IV)

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
873447.SPB_0378+ER
873447.SPB_1138+mitochondrial
873447.SPB_2205+ER
873447.SPB_2053+mitochondrial; (mitochondrial)
873447.SPB_0228+mitochondrial
873447.SPB_2043+ER
873447.SPB_1322+(mitochondrial)
873447.SPB_1790+ER
873447.SPB_0333+ER
873447.SPB_1874+ER
873447.SPB_0465+ER
873447.SPB_1215+ER
873447.SPB_0928+ER
873447.SPB_1703(PF05257)ER
873447.SPB_1157+(mitochondrial)
873447.SPB_2015(PF05257)ER
873447.SPB_0575+(mitochondrial)
873447.SPB_1572+ER
873447.SPB_2003(PF05257)ER
873447.SPB_1565+ER
873447.SPB_0472+(mitochondrial)
873447.SPB_0130(PF02971) (PF07837)
873447.SPB_1152+(ER)
873447.SPB_0762PF02916(ER)
873447.SPB_1294+(mitochondrial)
873447.SPB_2105+
873447.SPB_0377(PF05257)
873447.SPB_0370(PF02229)
873447.SPB_1918(PF00232)
873447.SPB_1916(PF00232)
873447.SPB_0209+
873447.SPB_0204+
873447.SPB_0997+
873447.SPB_0999+
873447.SPB_1835+
873447.SPB_1013+
873447.SPB_1653+
873447.SPB_0546+
873447.SPB_1936+
873447.SPB_1939PF00910
873447.SPB_0356+
873447.SPB_1331(PF05257)
873447.SPB_1984+
873447.SPB_0533(PF00232)
873447.SPB_0530+
873447.SPB_1061+
873447.SPB_1865+
873447.SPB_1354+
873447.SPB_1264+
873447.SPB_2062+
873447.SPB_0498+
873447.SPB_0476(PF00232)
873447.SPB_0473(PF00232)
873447.SPB_1278(PF00232)
873447.SPB_1272+
873447.SPB_1309+
873447.SPB_0480(PF00232)
873447.SPB_0640+
873447.SPB_0888+
873447.SPB_1851+
873447.SPB_0293(PF01487)
873447.SPB_0292+
873447.SPB_0298+
873447.SPB_0061+
873447.SPB_0065(PF00232)
873447.SPB_1889+
873447.SPB_2190+
873447.SPB_0438(PF00232)
873447.SPB_0058+
873447.SPB_1412+
873447.SPB_1146+
873447.SPB_1097(PF01487)
873447.SPB_1707+
873447.SPB_2143+
873447.SPB_1228+
873447.SPB_0042(PF06100)
873447.SPB_0043(PF06100)
873447.SPB_0555(PF00232)
873447.SPB_1394+
873447.SPB_0956+
873447.SPB_1773+
873447.SPB_2152+
873447.SPB_1796(PF09683)not used
873447.SPB_0386+
873447.SPB_1160+
873447.SPB_2126+
873447.SPB_0391+
873447.SPB_0123(PF02229)
873447.SPB_0081+
873447.SPB_1373(PF00232)
873447.SPB_1757+
873447.SPB_1023+
873447.SPB_0503(PF00232)
873447.SPB_1966+
873447.SPB_1961+
873447.SPB_1360(PF00232)

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: NO (FDR = 0.5 %)
  • Functional Type III secretion system: N.D.
  • Functional Type IV secretion system: YES (FDR = 7.2 %)
    Estimated copy number = 0 (0/0 KEGG proteins)
  • Functional Type VI secretion system: N.D.

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================