Effective results for Anaerococcus prevotii ACS-065-V-Col13 (eggnog40)

Summary

Number of putative secreted proteins: 25
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 13 eukaryotic-like domains, contained in 25 proteins (1 high, 24 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

Protein	EffectiveT3	EffectiveCCBD	T4SEpre	EffectiveELD	Predotar
879305.HMPREF9290_1468				(PF11070)	ER
879305.HMPREF9290_0187				(PF16199)	ER
879305.HMPREF9290_0452				(PF01813)	mitochondrial; not used
879305.HMPREF9290_1072				PF02150	(plastid)
879305.HMPREF9290_1448				(PF14512)
879305.HMPREF9290_0432				(PF01969)
879305.HMPREF9290_0433				(PF01969)
879305.HMPREF9290_1055				(PF14512)
879305.HMPREF9290_0453				(PF01813)
879305.HMPREF9290_0445				(PF01496)
879305.HMPREF9290_0447				(PF01991)
879305.HMPREF9290_0449				(PF01990)
879305.HMPREF9290_0448				(PF01992)
879305.HMPREF9290_1288				(PF16199)
879305.HMPREF9290_0450				(PF16886)
879305.HMPREF9290_1407				(PF01813)
879305.HMPREF9290_1409				(PF16886)
879305.HMPREF9290_1415				(PF01992)
879305.HMPREF9290_1411				(PF01990)
879305.HMPREF9290_1410				(PF01991)
879305.HMPREF9290_1413				(PF01496)
879305.HMPREF9290_1419				(PF02224)
879305.HMPREF9290_0770				(PF16199)
879305.HMPREF9290_0776				(PF12646)
879305.HMPREF9290_1420				(PF02224)	not used

Detailed merged results for each protein sequence

• Detailed merged results as table (merge_results.html)
• Detailed merged results as tab delimited file (merge_results.csv)

Individual results for each protein sequence

• EffectiveELD predictions (PROTEINS.ELD.TXT)
• Predotar predictions using animal/human model (Predotar_output_modelANIMAL.TXT)
• Predotar predictions using plant model (Predotar_output_modelPLANT.TXT)

Genome based results

Summary

• Gram negative: NO (FDR = 0.5 %)
• Functional Type III secretion system: N.D.
• Functional Type IV secretion system: NO (FDR = 7.2 %)
• Functional Type VI secretion system: N.D.

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================