Effective results for Hylemonella gracilis ATCC 19624 (eggnog40)

Summary

Number of putative secreted proteins: 38
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 8 eukaryotic-like domains, contained in 38 proteins (1 high, 37 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
887062.HGR_09349(PF12729)ER
887062.HGR_05636(PF12729)ER
887062.HGR_01247(PF12729)(ER); ER
887062.HGR_02868(PF12729)(ER)
887062.HGR_00645(PF12729)ER
887062.HGR_05781(PF12729)ER
887062.HGR_15879(PF12729)ER
887062.HGR_01694(PF12729)ER
887062.HGR_12387(PF12729)(mitochondrial)
887062.HGR_02967(PF12729)(ER)
887062.HGR_05641(PF12729)ER
887062.HGR_00135(PF13582)(mitochondrial)
887062.HGR_01954(PF12729)ER; (ER)
887062.HGR_05344(PF12729)(ER); (mitochondrial)
887062.HGR_09890(PF12729)(mitochondrial); mitochondrial
887062.HGR_15909(PF12729)ER; (ER)
887062.HGR_16128(PF12729)(ER); (mitochondrial)
887062.HGR_14089(PF12729)(mitochondrial)
887062.HGR_14164(PF12729)ER
887062.HGR_05464(PF12729)ER
887062.HGR_11780(PF12729)ER
887062.HGR_14849(PF12729)ER
887062.HGR_04668(PF12729)ER
887062.HGR_04014(PF02201)(mitochondrial)
887062.HGR_08064(PF13332)(plastid)
887062.HGR_14199PF07544plastid
887062.HGR_01427(PF12729)(ER)
887062.HGR_16043(PF04305)(ER)
887062.HGR_02133(PF04305)
887062.HGR_14499(PF02201)
887062.HGR_11381(PF12471)not used
887062.HGR_11376(PF07958)
887062.HGR_12607(PF13332)not used
887062.HGR_03162(PF12729)
887062.HGR_03157(PF04305)not used
887062.HGR_01142(PF13332)not used
887062.HGR_14204(PF12729)
887062.HGR_02123(PF12729)

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: YES (FDR = 0.5 %)
  • Functional Type III secretion system: NO (FDR = 12.5 %)
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: NO (FDR = 7.7 %)

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================