Effective results for Prevotella salivae DSM 15606 (eggnog40)

Summary

Number of putative secreted proteins: 29
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 15 eukaryotic-like domains, contained in 29 proteins (2 high, 27 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

Protein	EffectiveT3	EffectiveCCBD	T4SEpre	EffectiveELD	Predotar
888832.HMPREF9420_2544				(PF03051)	ER
888832.HMPREF9420_1726				(PF05686)	mitochondrial
888832.HMPREF9420_2392				(PF16387)	ER
888832.HMPREF9420_2396				(PF16387)	ER
888832.HMPREF9420_2512				(PF03432)	(mitochondrial)
888832.HMPREF9420_2693				(PF03051)	ER
888832.HMPREF9420_0872				(PF14771)	ER
888832.HMPREF9420_2088				(PF16317)	ER
888832.HMPREF9420_1760				(PF03051)	(mitochondrial)
888832.HMPREF9420_2653				(PF05693)	(mitochondrial)
888832.HMPREF9420_2283				(PF01531)
888832.HMPREF9420_1037				(PF16314)
888832.HMPREF9420_0809				(PF01715)
888832.HMPREF9420_2425				(PF16011)
888832.HMPREF9420_2700				(PF13481)
888832.HMPREF9420_1837				(PF03432)
888832.HMPREF9420_2399				(PF03432)
888832.HMPREF9420_1066				(PF03432)
888832.HMPREF9420_0481				(PF01715)
888832.HMPREF9420_0723				(PF03630)
888832.HMPREF9420_2633				(PF03432)
888832.HMPREF9420_2412				(PF13481)
888832.HMPREF9420_2771				(PF13481)
888832.HMPREF9420_0591				(PF01531)
888832.HMPREF9420_2837				(PF13481)
888832.HMPREF9420_0337				PF00018
888832.HMPREF9420_1599				(PF13481)
888832.HMPREF9420_1779				(PF13481)
888832.HMPREF9420_2588				PF16269

Detailed merged results for each protein sequence

• Detailed merged results as table (merge_results.html)
• Detailed merged results as tab delimited file (merge_results.csv)

Individual results for each protein sequence

• EffectiveELD predictions (PROTEINS.ELD.TXT)
• Predotar predictions using animal/human model (Predotar_output_modelANIMAL.TXT)
• Predotar predictions using plant model (Predotar_output_modelPLANT.TXT)

Genome based results

Summary

• Gram negative: YES (FDR = 0.5 %)
• Functional Type III secretion system: NO (FDR = 12.5 %)
• Functional Type IV secretion system: NO (FDR = 7.2 %)
• Functional Type VI secretion system: NO (FDR = 7.7 %)

Individual results for each secretion system

• List of 100 most important COGs/NOGs for prediction of functional Type III secretion system (T3_top100_COGS.xls)
• List of 100 most important COGs/NOGs for prediction of functional Type IV secretion system (T4_top100_COGS.xls)
• List of 100 most important COGs/NOGs for prediction of functional Type VI secretion system (T6_top100_COGS.xls)
• List of COGs assigned to Type III secretion system in KEGG (T3SS_KEGG_cmp.xls)
• List of COGs assigned to Type IV secretion system in KEGG (T4SS_KEGG_cmp.xls)
• List of COGs assigned to Type VI secretion system in KEGG (T6SS_KEGG_cmp.xls)

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================