Effective results for Treponema brennaborense DSM 12168 (eggnog40)

Summary

Number of putative secreted proteins: 38
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 23 eukaryotic-like domains, contained in 38 proteins (7 high, 31 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
906968.Trebr_1552(PF02278) (PF08124) (PF02884)ER
906968.Trebr_1554(PF02278) (PF08124) (PF02884)ER
906968.Trebr_1556(PF02278) (PF08124)(mitochondrial)
906968.Trebr_0682(PF16561)ER
906968.Trebr_0184(PF03659)ER
906968.Trebr_0553PF03415ER
906968.Trebr_1162(PF01715)ER; (ER)
906968.Trebr_0368(PF11070)ER
906968.Trebr_0296PF03151ER
906968.Trebr_2407PF03415ER
906968.Trebr_1324PF03415ER
906968.Trebr_0819(PF14307)(ER)
906968.Trebr_1135PF03727 PF00349
906968.Trebr_2315(PF02906)(mitochondrial)
906968.Trebr_1812(PF04432)
906968.Trebr_1075(PF06418)
906968.Trebr_1704PF03179
906968.Trebr_1702(PF01496)
906968.Trebr_1709(PF02906)
906968.Trebr_0439(PF14307)
906968.Trebr_2025(PF16011)
906968.Trebr_0777(PF02906)
906968.Trebr_1188(PF01496)
906968.Trebr_1185(PF16886)
906968.Trebr_1187(PF01813)
906968.Trebr_0349(PF16561)
906968.Trebr_2055(PF04488)
906968.Trebr_0334(PF02906)
906968.Trebr_2312(PF02906)
906968.Trebr_1696(PF01813)
906968.Trebr_1698(PF16886)
906968.Trebr_0745(PF04488)
906968.Trebr_0742PF11735
906968.Trebr_0258(PF02906)
906968.Trebr_0644(PF16314)
906968.Trebr_1091(PF01715)
906968.Trebr_1657(PF04432)
906968.Trebr_0875(PF06418)

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: YES (FDR = 0.5 %)
  • Functional Type III secretion system: NO (FDR = 12.5 %)
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: NO (FDR = 7.7 %)

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================