Effective results for Lacinutrix sp. 5H-3-7-4 (eggnog40)

Summary

Number of putative secreted proteins: 32
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 19 eukaryotic-like domains, contained in 32 proteins (4 high, 28 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
983544.Lacal_1102(PF00629) (PF05572)ER
983544.Lacal_1161(PF12483)ER
983544.Lacal_0348PF00431ER
983544.Lacal_1982(PF14240)ER
983544.Lacal_1981(PF14240)ER
983544.Lacal_1753(PF08787)ER
983544.Lacal_1400PF00431ER
983544.Lacal_1747(PF08787)ER
983544.Lacal_0428(PF05572)ER
983544.Lacal_0634(PF04784)ER
983544.Lacal_2467PF08017ER
983544.Lacal_2062(PF00629)(mitochondrial)
983544.Lacal_1022(PF03321)mitochondrial; (mitochondrial)
983544.Lacal_0062(PF00386)ER
983544.Lacal_2207(PF08787)ER
983544.Lacal_1979(PF00036)(ER)
983544.Lacal_0763(PF05572)ER
983544.Lacal_0974(PF01789)ER
983544.Lacal_1422(PF03321)(plastid)
983544.Lacal_2458(PF01679)ER; not used
983544.Lacal_1653(PF01679)ER; not used
983544.Lacal_1898(PF09537)
983544.Lacal_1745(PF08787)
983544.Lacal_0622(PF10504)
983544.Lacal_0640(PF04784)
983544.Lacal_0648(PF09537)
983544.Lacal_0075(PF03321)
983544.Lacal_0844(PF08695)
983544.Lacal_1952(PF07766)
983544.Lacal_1308(PF09537)
983544.Lacal_2164(PF10013)not used
983544.Lacal_0039PF13405

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: YES (FDR = 0.5 %)
  • Functional Type III secretion system: NO (FDR = 12.5 %)
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: NO (FDR = 7.7 %)

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================