Effective results for Novosphingobium nitrogenifigens DSM 19370 (eggnog40)

Summary

Number of putative secreted proteins: 78
- Predicted by T4SEpre: 59
- Predicted by EffectiveELD: 12 eukaryotic-like domains, contained in 32 proteins (5 high, 27 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): (Type IV)

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
983920.Y88_0814+(mitochondrial)
983920.Y88_2095+ER
983920.Y88_3102+mitochondrial
983920.Y88_0468+ER
983920.Y88_0288PF06351ER
983920.Y88_1882+(ER)
983920.Y88_0894+mitochondrial
983920.Y88_0969PF03901(mitochondrial)
983920.Y88_0629+(mitochondrial)
983920.Y88_1372+ER
983920.Y88_1623(PF13871)ER; (ER)
983920.Y88_2823+ER
983920.Y88_0456+(mitochondrial)
983920.Y88_1910+ER
983920.Y88_1132PF16058ER; (ER)
983920.Y88_2116+ER
983920.Y88_1644(PF13604)mitochondrial
983920.Y88_0732+ER
983920.Y88_2097+(ER)
983920.Y88_3782(PF13428) (PF13469)
983920.Y88_3757(PF03171) (PF14226)
983920.Y88_2432(PF03171) (PF14226)
983920.Y88_0462+(ER)
983920.Y88_0844(PF03171) (PF14226)
983920.Y88_2287+(PF13604)
983920.Y88_3366(PF13428) (PF13469)
983920.Y88_1289(PF13428) (PF13469)
983920.Y88_1579+plastid
983920.Y88_1581+plastid
983920.Y88_2730+(mitochondrial)
983920.Y88_3863+(PF13604)
983920.Y88_1836(PF03171) (PF14226)
983920.Y88_3872(PF13871)(ER)
983920.Y88_0358(PF13469)(plastid)
983920.Y88_2863(PF03171) (PF14226)
983920.Y88_3313(PF03171) (PF14226)
983920.Y88_1811+(mitochondrial)
983920.Y88_1780+
983920.Y88_1382+
983920.Y88_0696(PF13469)
983920.Y88_1263+
983920.Y88_3426+
983920.Y88_2337+
983920.Y88_0470PF10520
983920.Y88_3352+
983920.Y88_2564+
983920.Y88_3582+
983920.Y88_2760(PF13604)
983920.Y88_3362+
983920.Y88_3145+
983920.Y88_3034+
983920.Y88_1950(PF13661)
983920.Y88_0559+
983920.Y88_1171+
983920.Y88_2553+
983920.Y88_1381(PF13604)
983920.Y88_2014(PF13469)
983920.Y88_3613+
983920.Y88_2220+
983920.Y88_2909+
983920.Y88_0503+
983920.Y88_1569+
983920.Y88_3526+
983920.Y88_3675+
983920.Y88_3294(PF13469)
983920.Y88_0999+
983920.Y88_1002+
983920.Y88_1130+
983920.Y88_2203(PF11927)
983920.Y88_0698(PF13469)
983920.Y88_1834+
983920.Y88_2908(PF13604)
983920.Y88_3252+
983920.Y88_0222PF03901
983920.Y88_0300+
983920.Y88_1668(PF13469)
983920.Y88_1466(PF11927)
983920.Y88_3314(PF13469)

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: YES (FDR = 0.5 %)
  • Functional Type III secretion system: NO (FDR = 12.5 %)
  • Functional Type IV secretion system: YES (FDR = 7.2 %)
    Estimated copy number = 0.3 (3/10 KEGG proteins)
  • Functional Type VI secretion system: NO (FDR = 7.7 %)

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================