Effective results for Candidatus Odyssella thessalonicensis L13 (eggnog40)
Summary
Number of putative secreted proteins: 214
- Predicted by T4SEpre: 118
- Predicted by EffectiveELD: 25 eukaryotic-like domains, contained in 125 proteins (75 high, 50 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): Type IV
Protein based results
Putative secreted proteins (weak evidence indicated by parentheses)
Protein | EffectiveT3 | EffectiveCCBD | T4SEpre | EffectiveELD | Predotar |
---|---|---|---|---|---|
985867.COdytL_010100009231 | PF02796 (PF00239) | ER | |||
985867.COdytL_010100010955 | + | PF08238 | ER | ||
985867.COdytL_010100002390 | + | PF08238 | ER; (ER) | ||
985867.COdytL_010100001455 | + | PF00646 | ER | ||
985867.COdytL_010100011709 | PF02796 (PF00239) | (mitochondrial); mitochondrial | |||
985867.COdytL_010100002305 | (PF13516) PF08238 | ER | |||
985867.COdytL_010100002200 | PF12937 PF08238 | ER | |||
985867.COdytL_010100008701 | PF08238 PF00646 | ER | |||
985867.COdytL_010100006977 | PF08238 | ER | |||
985867.COdytL_010100003816 | + | ER | |||
985867.COdytL_010100003075 | + | ER | |||
985867.COdytL_010100008241 | + | ER | |||
985867.COdytL_010100008246 | PF08238 | ER | |||
985867.COdytL_010100011764 | (PF10354) | ER | |||
985867.COdytL_010100004436 | + | ER | |||
985867.COdytL_010100009046 | (PF04193) | ER | |||
985867.COdytL_010100001395 | PF08238 | ER | |||
985867.COdytL_010100010281 | + | ER | |||
985867.COdytL_010100008891 | (PF04193) | ER | |||
985867.COdytL_010100008876 | PF08238 | mitochondrial | |||
985867.COdytL_010100004716 | + | ER | |||
985867.COdytL_010100002275 | + | ER | |||
985867.COdytL_010100002475 | (PF13516) | ER | |||
985867.COdytL_010100007466 | PF08238 | (ER) | |||
985867.COdytL_010100007461 | PF08238 | ER | |||
985867.COdytL_010100011964 | PF00646 | mitochondrial; (mitochondrial) | |||
985867.COdytL_010100012924 | PF08238 | (mitochondrial); (ER) | |||
985867.COdytL_010100005812 | + | ER | |||
985867.COdytL_010100008211 | PF15295 | ER | |||
985867.COdytL_010100011155 | PF00646 | ER | |||
985867.COdytL_010100011150 | PF00646 | ER | |||
985867.COdytL_010100010206 | + | ER | |||
985867.COdytL_010100010331 | + | (ER) | |||
985867.COdytL_010100007067 | + | ER | |||
985867.COdytL_010100002745 | + | (mitochondrial) | |||
985867.COdytL_010100004416 | PF12937 | ER | |||
985867.COdytL_010100003295 | (PF01764) | ER | |||
985867.COdytL_010100000400 | + | ER | |||
985867.COdytL_010100005327 | (PF01436) | ER | |||
985867.COdytL_010100006857 | (PF00023) | mitochondrial | |||
985867.COdytL_010100003756 | (PF13516) | ER | |||
985867.COdytL_010100004996 | PF12937 | ER | |||
985867.COdytL_010100000695 | + | ER | |||
985867.COdytL_010100006447 | PF08238 | ER | |||
985867.COdytL_010100005317 | (PF01436) | ER | |||
985867.COdytL_010100007241 | (PF01764) | ER; (ER) | |||
985867.COdytL_010100007336 | PF12937 | ER | |||
985867.COdytL_010100008951 | PF08238 | ER | |||
985867.COdytL_010100007931 | (PF00023) | ER | |||
985867.COdytL_010100010051 | PF08238 | ER | |||
985867.COdytL_010100010056 | + | ER | |||
985867.COdytL_010100001930 | + | ER; (ER) | |||
985867.COdytL_010100012354 | + | (ER) | |||
985867.COdytL_010100011999 | PF02796 (PF00239) | (mitochondrial) | |||
985867.COdytL_010100008766 | PF08238 | (mitochondrial) | |||
985867.COdytL_010100011609 | + | (ER) | |||
985867.COdytL_010100012509 | + | ER | |||
985867.COdytL_010100003305 | (PF01764) | (ER) | |||
985867.COdytL_010100007246 | + | ER | |||
985867.COdytL_010100001005 | + | (ER) | |||
985867.COdytL_010100000535 | + | ER | |||
985867.COdytL_010100002795 | PF12937 | ER | |||
985867.COdytL_010100008901 | PF08238 | ER; (ER) | |||
985867.COdytL_010100003205 | + | ER | |||
985867.COdytL_010100011284 | + | ER | |||
985867.COdytL_010100008581 | PF08238 | ER | |||
985867.COdytL_010100004006 | + | (mitochondrial) | |||
985867.COdytL_010100009341 | PF08238 | ER | |||
985867.COdytL_010100010710 | PF00646 | ER | |||
985867.COdytL_010100010001 | PF12937 | ER | |||
985867.COdytL_010100000830 | + | ER | |||
985867.COdytL_010100000545 | PF12937 | (ER) | |||
985867.COdytL_010100002945 | PF12937 | ER | |||
985867.COdytL_010100001165 | PF08238 | ER | |||
985867.COdytL_010100006757 | + | ER | |||
985867.COdytL_010100007591 | (PF01427) | (ER) | |||
985867.COdytL_010100008041 | + | ER | |||
985867.COdytL_010100002635 | (PF01764) | ER | |||
985867.COdytL_010100008351 | + | ER | |||
985867.COdytL_010100012674 | + | ER; (ER) | |||
985867.COdytL_010100004251 | PF12937 | ER | |||
985867.COdytL_010100010705 | (PF13516) | (mitochondrial) | |||
985867.COdytL_010100002950 | + | mitochondrial | |||
985867.COdytL_010100006617 | + | ER | |||
985867.COdytL_010100007581 | (PF01427) | ER | |||
985867.COdytL_010100002625 | (PF06455) | ER | |||
985867.COdytL_010100004241 | PF12937 | ER | |||
985867.COdytL_010100008926 | + | ER | |||
985867.COdytL_010100007811 | + | ER; (ER) | |||
985867.COdytL_010100010605 | PF08238 | ER | |||
985867.COdytL_010100000565 | (PF01764) | ER | |||
985867.COdytL_010100005552 | PF08238 | ER | |||
985867.COdytL_010100001210 | + | ER; (ER) | |||
985867.COdytL_010100007551 | + | ER | |||
985867.COdytL_010100003586 | PF08238 | ER | |||
985867.COdytL_010100012859 | PF08238 | ER | |||
985867.COdytL_010100009081 | (PF00239) | (mitochondrial) | |||
985867.COdytL_010100000800 | + | ER | |||
985867.COdytL_010100002380 | + | ER | |||
985867.COdytL_010100005892 | (PF01436) | (ER) | |||
985867.COdytL_010100007761 | + | ER | |||
985867.COdytL_010100002605 | + | ER | |||
985867.COdytL_010100007946 | (PF06258) | ER | |||
985867.COdytL_010100004266 | + | (mitochondrial) | |||
985867.COdytL_010100008046 | + | (mitochondrial) | |||
985867.COdytL_010100011244 | PF00646 | (ER) | |||
985867.COdytL_010100010191 | (PF01457) | ER | |||
985867.COdytL_010100005151 | + | (mitochondrial) | |||
985867.COdytL_010100013189 | PF02796 (PF00239) | ||||
985867.COdytL_010100012484 | PF02796 (PF00239) | ||||
985867.COdytL_010100013214 | + | (ER) | |||
985867.COdytL_010100002270 | + | (ER) | |||
985867.COdytL_010100007192 | + | (mitochondrial) | |||
985867.COdytL_010100009336 | PF02796 (PF00239) | ||||
985867.COdytL_010100011209 | (PF13438) | (plastid) | |||
985867.COdytL_010100009486 | + | (mitochondrial) | |||
985867.COdytL_010100010855 | PF08238 | (plastid) | |||
985867.COdytL_010100012684 | PF02796 (PF00239) | ||||
985867.COdytL_010100008946 | PF02796 (PF00239) | ||||
985867.COdytL_010100010261 | + | (plastid) | |||
985867.COdytL_010100011434 | PF02002 | (mitochondrial) | |||
985867.COdytL_010100002820 | PF12937 | (ER) | |||
985867.COdytL_010100013119 | PF02796 (PF00239) | ||||
985867.COdytL_010100000215 | + | (mitochondrial) | |||
985867.COdytL_010100006267 | PF12937 | (ER) | |||
985867.COdytL_010100001920 | (PF03083) | (ER) | |||
985867.COdytL_010100009176 | PF02796 (PF00239) | ||||
985867.COdytL_010100003230 | + | (ER) | |||
985867.COdytL_010100009191 | (PF00239) | (mitochondrial) | |||
985867.COdytL_010100007566 | + | (plastid) | |||
985867.COdytL_010100007771 | + | (ER) | |||
985867.COdytL_010100011749 | PF02796 (PF00239) | ||||
985867.COdytL_010100013084 | PF02796 (PF00239) | ||||
985867.COdytL_010100002995 | (PF01436) | plastid | |||
985867.COdytL_010100011249 | PF02796 (PF00239) | ||||
985867.COdytL_010100007711 | PF08238 | ||||
985867.COdytL_010100013054 | (PF00239) | ||||
985867.COdytL_010100010980 | + | ||||
985867.COdytL_010100011699 | + | ||||
985867.COdytL_010100009286 | (PF00239) | ||||
985867.COdytL_010100002845 | PF08238 | ||||
985867.COdytL_010100001715 | PF14736 | ||||
985867.COdytL_010100003000 | (PF01436) | ||||
985867.COdytL_010100008896 | (PF00239) | ||||
985867.COdytL_010100003821 | (PF05406) | ||||
985867.COdytL_010100004621 | PF08238 | ||||
985867.COdytL_010100010171 | PF08238 | ||||
985867.COdytL_010100010770 | + | ||||
985867.COdytL_010100006737 | + | ||||
985867.COdytL_010100006937 | + | ||||
985867.COdytL_010100008881 | (PF13516) | ||||
985867.COdytL_010100011219 | (PF05406) | ||||
985867.COdytL_010100012124 | + | ||||
985867.COdytL_010100000420 | + | ||||
985867.COdytL_010100011254 | PF08238 | ||||
985867.COdytL_010100003355 | + | ||||
985867.COdytL_010100010840 | PF08238 | ||||
985867.COdytL_010100005932 | + | ||||
985867.COdytL_010100007097 | + | ||||
985867.COdytL_010100012549 | (PF00239) | ||||
985867.COdytL_010100012019 | (PF03083) | ||||
985867.COdytL_010100011899 | + | ||||
985867.COdytL_010100004346 | + | ||||
985867.COdytL_010100009001 | PF08238 | ||||
985867.COdytL_010100010850 | PF08238 | ||||
985867.COdytL_010100005251 | (PF00477) | ||||
985867.COdytL_010100006692 | + | ||||
985867.COdytL_010100007306 | + | ||||
985867.COdytL_010100004976 | + | ||||
985867.COdytL_010100011884 | + | ||||
985867.COdytL_010100012974 | + | ||||
985867.COdytL_010100012979 | + | ||||
985867.COdytL_010100011085 | PF12937 | ||||
985867.COdytL_010100011534 | + | ||||
985867.COdytL_010100008546 | + | ||||
985867.COdytL_010100010590 | (PF14566) | ||||
985867.COdytL_010100010860 | PF08238 | ||||
985867.COdytL_010100010660 | + | ||||
985867.COdytL_010100010466 | PF16715 | ||||
985867.COdytL_010100002345 | (PF00023) | ||||
985867.COdytL_010100012564 | + | ||||
985867.COdytL_010100009151 | + | ||||
985867.COdytL_010100011324 | + | ||||
985867.COdytL_010100011050 | + | ||||
985867.COdytL_010100006272 | PF08238 | ||||
985867.COdytL_010100004021 | PF12937 | ||||
985867.COdytL_010100000855 | + | ||||
985867.COdytL_010100007681 | + | ||||
985867.COdytL_010100003541 | + | ||||
985867.COdytL_010100000445 | + | ||||
985867.COdytL_010100012404 | + | ||||
985867.COdytL_010100012704 | + | ||||
985867.COdytL_010100012884 | PF08238 | ||||
985867.COdytL_010100011664 | + | ||||
985867.COdytL_010100009186 | (PF00239) | not used | |||
985867.COdytL_010100001010 | (PF13516) | ||||
985867.COdytL_010100007576 | (PF01427) | ||||
985867.COdytL_010100012899 | (PF13438) | ||||
985867.COdytL_010100007976 | + | ||||
985867.COdytL_010100009536 | + | ||||
985867.COdytL_010100008756 | + | ||||
985867.COdytL_010100001205 | (PF14328) | ||||
985867.COdytL_010100001195 | + | ||||
985867.COdytL_010100006987 | (PF06258) | ||||
985867.COdytL_010100004666 | (PF01427) | ||||
985867.COdytL_010100009411 | PF16715 | ||||
985867.COdytL_010100009416 | PF16715 | ||||
985867.COdytL_010100013099 | (PF00239) | ||||
985867.COdytL_010100002055 | + | ||||
985867.COdytL_010100011924 | (PF13438) | ||||
985867.COdytL_010100011929 | (PF05406) | ||||
985867.COdytL_010100002515 | (PF13438) | ||||
985867.COdytL_010100008251 | PF08238 | ||||
985867.COdytL_010100009096 | (PF00239) |
Detailed merged results for each protein sequence
- Detailed merged results as table (merge_results.html)
- Detailed merged results as tab delimited file (merge_results.csv)
Individual results for each protein sequence
- T4SEpre bpbAac predictions (T4SEpre_bpbAac_FinalResult.csv)
- T4SEpre psAac predictions (T4SEpre_psAac_FinalResult.csv)
- EffectiveELD predictions (PROTEINS.ELD.TXT)
- Predotar predictions using animal/human model (Predotar_output_modelANIMAL.TXT)
- Predotar predictions using plant model (Predotar_output_modelPLANT.TXT)
Genome based results
Summary
- Gram negative: YES (FDR = 0.5 %)
- Functional Type III secretion system: NO (FDR = 12.5 %)
- Functional Type IV secretion system: YES (FDR = 7.2 %)
Estimated copy number = 0.6 (6/10 KEGG proteins)
- Functional Type VI secretion system: NO (FDR = 7.7 %)
Individual results for each secretion system
- List of 100 most important COGs/NOGs for prediction of functional Type III secretion system (T3_top100_COGS.xls)
- List of 100 most important COGs/NOGs for prediction of functional Type IV secretion system (T4_top100_COGS.xls)
- List of 100 most important COGs/NOGs for prediction of functional Type VI secretion system (T6_top100_COGS.xls)
- List of COGs assigned to Type III secretion system in KEGG (T3SS_KEGG_cmp.xls)
- List of COGs assigned to Type IV secretion system in KEGG (T4SS_KEGG_cmp.xls)
- List of COGs assigned to Type VI secretion system in KEGG (T6SS_KEGG_cmp.xls)
Parameters:
==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================
Estimated copy number = 0.6 (6/10 KEGG proteins)