Effective results for Candidatus Odyssella thessalonicensis L13 (eggnog40)

Summary

Number of putative secreted proteins: 214
- Predicted by T4SEpre: 118
- Predicted by EffectiveELD: 25 eukaryotic-like domains, contained in 125 proteins (75 high, 50 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): Type IV

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
985867.COdytL_010100009231PF02796 (PF00239)ER
985867.COdytL_010100010955+PF08238ER
985867.COdytL_010100002390+PF08238ER; (ER)
985867.COdytL_010100001455+PF00646ER
985867.COdytL_010100011709PF02796 (PF00239)(mitochondrial); mitochondrial
985867.COdytL_010100002305(PF13516) PF08238ER
985867.COdytL_010100002200PF12937 PF08238ER
985867.COdytL_010100008701PF08238 PF00646ER
985867.COdytL_010100006977PF08238ER
985867.COdytL_010100003816+ER
985867.COdytL_010100003075+ER
985867.COdytL_010100008241+ER
985867.COdytL_010100008246PF08238ER
985867.COdytL_010100011764(PF10354)ER
985867.COdytL_010100004436+ER
985867.COdytL_010100009046(PF04193)ER
985867.COdytL_010100001395PF08238ER
985867.COdytL_010100010281+ER
985867.COdytL_010100008891(PF04193)ER
985867.COdytL_010100008876PF08238mitochondrial
985867.COdytL_010100004716+ER
985867.COdytL_010100002275+ER
985867.COdytL_010100002475(PF13516)ER
985867.COdytL_010100007466PF08238(ER)
985867.COdytL_010100007461PF08238ER
985867.COdytL_010100011964PF00646mitochondrial; (mitochondrial)
985867.COdytL_010100012924PF08238(mitochondrial); (ER)
985867.COdytL_010100005812+ER
985867.COdytL_010100008211PF15295ER
985867.COdytL_010100011155PF00646ER
985867.COdytL_010100011150PF00646ER
985867.COdytL_010100010206+ER
985867.COdytL_010100010331+(ER)
985867.COdytL_010100007067+ER
985867.COdytL_010100002745+(mitochondrial)
985867.COdytL_010100004416PF12937ER
985867.COdytL_010100003295(PF01764)ER
985867.COdytL_010100000400+ER
985867.COdytL_010100005327(PF01436)ER
985867.COdytL_010100006857(PF00023)mitochondrial
985867.COdytL_010100003756(PF13516)ER
985867.COdytL_010100004996PF12937ER
985867.COdytL_010100000695+ER
985867.COdytL_010100006447PF08238ER
985867.COdytL_010100005317(PF01436)ER
985867.COdytL_010100007241(PF01764)ER; (ER)
985867.COdytL_010100007336PF12937ER
985867.COdytL_010100008951PF08238ER
985867.COdytL_010100007931(PF00023)ER
985867.COdytL_010100010051PF08238ER
985867.COdytL_010100010056+ER
985867.COdytL_010100001930+ER; (ER)
985867.COdytL_010100012354+(ER)
985867.COdytL_010100011999PF02796 (PF00239)(mitochondrial)
985867.COdytL_010100008766PF08238(mitochondrial)
985867.COdytL_010100011609+(ER)
985867.COdytL_010100012509+ER
985867.COdytL_010100003305(PF01764)(ER)
985867.COdytL_010100007246+ER
985867.COdytL_010100001005+(ER)
985867.COdytL_010100000535+ER
985867.COdytL_010100002795PF12937ER
985867.COdytL_010100008901PF08238ER; (ER)
985867.COdytL_010100003205+ER
985867.COdytL_010100011284+ER
985867.COdytL_010100008581PF08238ER
985867.COdytL_010100004006+(mitochondrial)
985867.COdytL_010100009341PF08238ER
985867.COdytL_010100010710PF00646ER
985867.COdytL_010100010001PF12937ER
985867.COdytL_010100000830+ER
985867.COdytL_010100000545PF12937(ER)
985867.COdytL_010100002945PF12937ER
985867.COdytL_010100001165PF08238ER
985867.COdytL_010100006757+ER
985867.COdytL_010100007591(PF01427)(ER)
985867.COdytL_010100008041+ER
985867.COdytL_010100002635(PF01764)ER
985867.COdytL_010100008351+ER
985867.COdytL_010100012674+ER; (ER)
985867.COdytL_010100004251PF12937ER
985867.COdytL_010100010705(PF13516)(mitochondrial)
985867.COdytL_010100002950+mitochondrial
985867.COdytL_010100006617+ER
985867.COdytL_010100007581(PF01427)ER
985867.COdytL_010100002625(PF06455)ER
985867.COdytL_010100004241PF12937ER
985867.COdytL_010100008926+ER
985867.COdytL_010100007811+ER; (ER)
985867.COdytL_010100010605PF08238ER
985867.COdytL_010100000565(PF01764)ER
985867.COdytL_010100005552PF08238ER
985867.COdytL_010100001210+ER; (ER)
985867.COdytL_010100007551+ER
985867.COdytL_010100003586PF08238ER
985867.COdytL_010100012859PF08238ER
985867.COdytL_010100009081(PF00239)(mitochondrial)
985867.COdytL_010100000800+ER
985867.COdytL_010100002380+ER
985867.COdytL_010100005892(PF01436)(ER)
985867.COdytL_010100007761+ER
985867.COdytL_010100002605+ER
985867.COdytL_010100007946(PF06258)ER
985867.COdytL_010100004266+(mitochondrial)
985867.COdytL_010100008046+(mitochondrial)
985867.COdytL_010100011244PF00646(ER)
985867.COdytL_010100010191(PF01457)ER
985867.COdytL_010100005151+(mitochondrial)
985867.COdytL_010100013189PF02796 (PF00239)
985867.COdytL_010100012484PF02796 (PF00239)
985867.COdytL_010100013214+(ER)
985867.COdytL_010100002270+(ER)
985867.COdytL_010100007192+(mitochondrial)
985867.COdytL_010100009336PF02796 (PF00239)
985867.COdytL_010100011209(PF13438)(plastid)
985867.COdytL_010100009486+(mitochondrial)
985867.COdytL_010100010855PF08238(plastid)
985867.COdytL_010100012684PF02796 (PF00239)
985867.COdytL_010100008946PF02796 (PF00239)
985867.COdytL_010100010261+(plastid)
985867.COdytL_010100011434PF02002(mitochondrial)
985867.COdytL_010100002820PF12937(ER)
985867.COdytL_010100013119PF02796 (PF00239)
985867.COdytL_010100000215+(mitochondrial)
985867.COdytL_010100006267PF12937(ER)
985867.COdytL_010100001920(PF03083)(ER)
985867.COdytL_010100009176PF02796 (PF00239)
985867.COdytL_010100003230+(ER)
985867.COdytL_010100009191(PF00239)(mitochondrial)
985867.COdytL_010100007566+(plastid)
985867.COdytL_010100007771+(ER)
985867.COdytL_010100011749PF02796 (PF00239)
985867.COdytL_010100013084PF02796 (PF00239)
985867.COdytL_010100002995(PF01436)plastid
985867.COdytL_010100011249PF02796 (PF00239)
985867.COdytL_010100007711PF08238
985867.COdytL_010100013054(PF00239)
985867.COdytL_010100010980+
985867.COdytL_010100011699+
985867.COdytL_010100009286(PF00239)
985867.COdytL_010100002845PF08238
985867.COdytL_010100001715PF14736
985867.COdytL_010100003000(PF01436)
985867.COdytL_010100008896(PF00239)
985867.COdytL_010100003821(PF05406)
985867.COdytL_010100004621PF08238
985867.COdytL_010100010171PF08238
985867.COdytL_010100010770+
985867.COdytL_010100006737+
985867.COdytL_010100006937+
985867.COdytL_010100008881(PF13516)
985867.COdytL_010100011219(PF05406)
985867.COdytL_010100012124+
985867.COdytL_010100000420+
985867.COdytL_010100011254PF08238
985867.COdytL_010100003355+
985867.COdytL_010100010840PF08238
985867.COdytL_010100005932+
985867.COdytL_010100007097+
985867.COdytL_010100012549(PF00239)
985867.COdytL_010100012019(PF03083)
985867.COdytL_010100011899+
985867.COdytL_010100004346+
985867.COdytL_010100009001PF08238
985867.COdytL_010100010850PF08238
985867.COdytL_010100005251(PF00477)
985867.COdytL_010100006692+
985867.COdytL_010100007306+
985867.COdytL_010100004976+
985867.COdytL_010100011884+
985867.COdytL_010100012974+
985867.COdytL_010100012979+
985867.COdytL_010100011085PF12937
985867.COdytL_010100011534+
985867.COdytL_010100008546+
985867.COdytL_010100010590(PF14566)
985867.COdytL_010100010860PF08238
985867.COdytL_010100010660+
985867.COdytL_010100010466PF16715
985867.COdytL_010100002345(PF00023)
985867.COdytL_010100012564+
985867.COdytL_010100009151+
985867.COdytL_010100011324+
985867.COdytL_010100011050+
985867.COdytL_010100006272PF08238
985867.COdytL_010100004021PF12937
985867.COdytL_010100000855+
985867.COdytL_010100007681+
985867.COdytL_010100003541+
985867.COdytL_010100000445+
985867.COdytL_010100012404+
985867.COdytL_010100012704+
985867.COdytL_010100012884PF08238
985867.COdytL_010100011664+
985867.COdytL_010100009186(PF00239)not used
985867.COdytL_010100001010(PF13516)
985867.COdytL_010100007576(PF01427)
985867.COdytL_010100012899(PF13438)
985867.COdytL_010100007976+
985867.COdytL_010100009536+
985867.COdytL_010100008756+
985867.COdytL_010100001205(PF14328)
985867.COdytL_010100001195+
985867.COdytL_010100006987(PF06258)
985867.COdytL_010100004666(PF01427)
985867.COdytL_010100009411PF16715
985867.COdytL_010100009416PF16715
985867.COdytL_010100013099(PF00239)
985867.COdytL_010100002055+
985867.COdytL_010100011924(PF13438)
985867.COdytL_010100011929(PF05406)
985867.COdytL_010100002515(PF13438)
985867.COdytL_010100008251PF08238
985867.COdytL_010100009096(PF00239)

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: YES (FDR = 0.5 %)
  • Functional Type III secretion system: NO (FDR = 12.5 %)
  • Functional Type IV secretion system: YES (FDR = 7.2 %)
    Estimated copy number = 0.6 (6/10 KEGG proteins)
  • Functional Type VI secretion system: NO (FDR = 7.7 %)

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================