Effective results for Rubrivivax benzoatilyticus JA2 = ATCC BAA-35 (eggnog40)

Summary

Number of putative secreted proteins: 23
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 9 eukaryotic-like domains, contained in 23 proteins (0 high, 23 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
987059.RBXJA2T_02722(PF16036)ER
987059.RBXJA2T_09537(PF03209)(ER)
987059.RBXJA2T_03116(PF16036)ER
987059.RBXJA2T_09592(PF03209)ER
987059.RBXJA2T_03566(PF02333)ER
987059.RBXJA2T_12312(PF16036)ER
987059.RBXJA2T_01275(PF01515)(plastid)
987059.RBXJA2T_03823(PF10013)not used
987059.RBXJA2T_18473(PF01515)
987059.RBXJA2T_02882(PF01515)
987059.RBXJA2T_04938(PF12513)
987059.RBXJA2T_18703(PF00101)
987059.RBXJA2T_08420(PF00856)
987059.RBXJA2T_10581(PF01515)
987059.RBXJA2T_07603(PF00856)
987059.RBXJA2T_06075(PF02333)not used
987059.RBXJA2T_06255(PF01515)
987059.RBXJA2T_13954(PF01515)
987059.RBXJA2T_00390(PF01515)
987059.RBXJA2T_01365(PF05706)
987059.RBXJA2T_00360(PF00101)
987059.RBXJA2T_19456(PF03209)
987059.RBXJA2T_02632(PF00856)

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: YES (FDR = 0.5 %)
  • Functional Type III secretion system: NO (FDR = 12.5 %)
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: NO (FDR = 7.7 %)

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================