Effective results for Aquabacterium sp. NJ1 (refseq)

Summary

Number of putative secreted proteins: 49
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 16 eukaryotic-like domains, contained in 49 proteins (11 high, 38 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): Type VI

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
WP_052162070.1(PF17186)mitochondrial
WP_035035886.1(PF01852)ER
WP_035039850.1(PF00657)ER
WP_052162567.1(PF05023)ER
WP_052162503.1PF03283ER
WP_052162178.1(PF00657)ER
WP_035039920.1(PF00487)ER
WP_052162782.1PF16036ER
WP_052162210.1(PF00487)ER
WP_052162298.1PF03283(mitochondrial)
WP_035037600.1PF16036ER
WP_035037817.1(PF01852)(ER); ER
WP_035034876.1PF16036ER
WP_052162196.1PF03283ER
WP_035041578.1(PF01564)ER
WP_035037855.1PF16036ER
WP_035034643.1PF16036ER
WP_035038148.1PF16036(mitochondrial)
WP_052162237.1(PF00657)(mitochondrial)
WP_035037665.1(PF17048)ER
WP_035039806.1(PF02458)(mitochondrial)
WP_035037593.1(PF17186)(mitochondrial)
WP_035038156.1(PF12740)(ER)
WP_052162799.1(PF01564)(mitochondrial)
WP_035038643.1PF07647(ER)
WP_035038935.1(PF00657)(ER)
WP_035035905.1(PF00487)(ER)
WP_052162994.1(PF00487)(ER)
WP_035034440.1(PF00487)
WP_035041671.1(PF00487)
WP_035035246.1(PF01564)
WP_035041395.1(PF01564)
WP_035036921.1(PF00487)
WP_052162214.1(PF00487)
WP_035038057.1(PF12740)
WP_035039315.1(PF12471)
WP_035039317.1(PF07958)
WP_052162657.1(PF00487)
WP_035038163.1(PF01564)
WP_035039455.1(PF09791)
WP_035039424.1(PF00487)
WP_035039833.1(PF00487)
WP_052162215.1(PF00487)
WP_052162924.1(PF00487)
WP_035037628.1(PF08695)
WP_052162213.1(PF00487)
WP_035042463.1(PF09791)
WP_035038824.1PF16036
WP_035036089.1(PF00487)

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: YES (FDR = 0.5 %)
  • Functional Type III secretion system: NO (FDR = 12.5 %)
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: YES (FDR = 7.7 %)
    Estimated copy number = 4.125 (33/8 KEGG proteins)

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=GENOTYPE
EMAIL=
==========================================================