Metamenu

Genomes encoding eukaryotic-like proteins

PF00398 Ribosomal RNA adenine dimethylase

Copy number in non-pathogens:
Mean=1.14 Stddev=0.44

Genomes significantly enriched in this eukaryotic-like domain (ELD; score >= 4):

Genome Class* ELD score Number of proteins containing this domain
Bradyrhizobium diazoefficiens s 4 3
Staphylococcus aureus 16K s 4 3
Bifidobacterium breve s 4 3
Bradyrhizobium japonicum USDA 6 s 4 3
Streptococcus pneumoniae s 4 3
Streptococcus pneumoniae s 4 3
Bacillus cereus s 4 3
Bacillus cereus s 4 3
Bacillus cereus s 4 3
Streptococcus suis s 4 3
Streptococcus suis s 4 3
Staphylococcus aureus s 4 3
Staphylococcus aureus s 4 3
Staphylococcus aureus s 4 3
Staphylococcus aureus s 4 3
Staphylococcus aureus s 4 3
Staphylococcus aureus s 4 3
Staphylococcus aureus s 4 3
Staphylococcus aureus s 4 3
Streptococcus pneumoniae s 4 3
Streptococcus pneumoniae s 4 3
Staphylococcus aureus s 4 3
Staphylococcus aureus s 4 3
Staphylococcus aureus s 4 3
Staphylococcus aureus s 4 3
Staphylococcus aureus s 4 3
Staphylococcus aureus s 4 3
Staphylococcus aureus s 4 3
Staphylococcus aureus s 4 3
Staphylococcus aureus s 4 3
Staphylococcus aureus s 4 3
Staphylococcus aureus s 4 3
Staphylococcus aureus s 4 3
Staphylococcus aureus s 4 3
Staphylococcus aureus s 4 3
Staphylococcus aureus s 4 3
Staphylococcus aureus s 4 3
Staphylococcus aureus s 4 3
Staphylococcus aureus s 4 3
Staphylococcus aureus s 4 3
Staphylococcus aureus s 4 3
Staphylococcus aureus s 4 3
Staphylococcus aureus s 4 3
Staphylococcus aureus s 4 3
Staphylococcus aureus s 4 3
Staphylococcus aureus s 4 3
Staphylococcus aureus s 4 3
Staphylococcus aureus s 4 3
Staphylococcus aureus s 4 3
Staphylococcus aureus s 4 3
Streptococcus suis s 4 3
Streptococcus pneumoniae s 4 3
Staphylococcus aureus s 4 3
Streptococcus pneumoniae s 4 3
Streptococcus pneumoniae s 4 3
Paenibacillus senegalensis JC66 s 4 3
Bradyrhizobium sp. STM 3843 s 4 3
Gorillibacterium massiliense s 4 3
Staphylococcus saprophyticus s 4 3
Staphylococcus saprophyticus s 4 3
Staphylococcus aureus s 4 3
Streptococcus pneumoniae s 4 3
Streptococcus pneumoniae s 6 4
Streptococcus pneumoniae s 4 3
Clostridium ihumii AP5 s 4 3
Streptococcus suis s 4 3
Streptococcus pneumoniae s 4 3
Streptococcus suis s 4 3
Streptococcus suis s 4 3
Enterococcus faecium s 4 3
Enterococcus faecium s 4 3
Enterococcus faecium s 6 4
Enterococcus faecium s 6 4
Enterococcus faecium s 4 3
Enterococcus faecium s 4 3
Enterococcus faecium s 4 3
Enterococcus faecium s 4 3
Enterococcus faecium s 4 3
Enterococcus faecium s 4 3
Enterococcus faecium s 6 4
Enterococcus faecium s 4 3
Enterococcus faecium s 8 5
Streptococcus pneumoniae s 4 3
Staphylococcus aureus s 4 3
Staphylococcus aureus s 4 3
Staphylococcus aureus s 4 3
Staphylococcus aureus s 4 3
Staphylococcus aureus s 4 3
Staphylococcus aureus s 4 3
Staphylococcus aureus s 4 3
Staphylococcus aureus s 4 3
Staphylococcus aureus s 6 4
Staphylococcus aureus s 4 3
Staphylococcus aureus subsp. aureus Mu3 s 6 4
Staphylococcus aureus s 4 3
Staphylococcus aureus s 4 3
Staphylococcus aureus s 4 3
Staphylococcus aureus s 4 3
Staphylococcus aureus s 4 3
Staphylococcus aureus s 4 3
Staphylococcus aureus s 4 3
Staphylococcus aureus s 4 3
Staphylococcus aureus s 4 3
Staphylococcus aureus s 4 3
Staphylococcus aureus s 4 3
Staphylococcus aureus s 4 3
Staphylococcus aureus s 4 3
Staphylococcus aureus s 6 4
Staphylococcus aureus s 4 3
Staphylococcus aureus s 4 3
Staphylococcus aureus s 4 3
Staphylococcus aureus s 6 4
Staphylococcus aureus s 4 3
Staphylococcus aureus s 4 3
Staphylococcus aureus s 4 3
Staphylococcus aureus s 4 3
Staphylococcus aureus s 4 3
Staphylococcus aureus s 6 4
Staphylococcus aureus s 6 4
Staphylococcus aureus s 4 3
Staphylococcus aureus s 4 3
Staphylococcus aureus s 4 3
Staphylococcus aureus s 4 3
Staphylococcus aureus s 6 4
Bacteroides coprocola DSM 17136 s 4 3
Staphylococcus aureus subsp. aureus CIG1176 s 4 3
Staphylococcus aureus subsp. aureus CIG1213 s 4 3
Staphylococcus aureus subsp. aureus CIG1214 s 4 3
Staphylococcus aureus subsp. aureus CIG1242 s 6 4
Staphylococcus aureus subsp. aureus CIG1267 s 4 3
Staphylococcus aureus subsp. aureus CIG1605 s 4 3
Staphylococcus aureus subsp. aureus CIG547 s 4 3
Staphylococcus aureus subsp. aureus CIGC348 s 4 3
Staphylococcus aureus subsp. aureus CIG1750 s 6 4
Bacillus cereus AH621 s 4 3
Bacillus cereus BGSC 6E1 s 4 3
Bacillus cereus IS075 s 4 3
Staphylococcus aureus M0687 s 4 3
Staphylococcus aureus M1248 s 4 3
Staphylococcus aureus M1255 s 4 3
Staphylococcus aureus M1095 s 4 3
Staphylococcus aureus M0510 s 4 3
Bradyrhizobium sp. YR681 s 4 3
Staphylococcus aureus M1034 s 4 3
Staphylococcus aureus M1126 s 4 3
Staphylococcus aureus M1405 s 4 3
Enterococcus faecalis EnGen0332 s 4 3
Streptococcus agalactiae GB00947 s 4 3
Staphylococcus aureus M0900 s 4 3
Staphylococcus aureus M0273 s 4 3
Clostridium saccharobutylicum DSM 13864 s 4 3
Bradyrhizobium elkanii USDA 76 s 4 3
Mesorhizobium loti NZP2037 s 4 3
Enterococcus faecalis 599 s 4 3
Enterococcus faecium C1904 s 4 3
Enterococcus faecium P1137 s 4 3
Staphylococcus aureus subsp. aureus CM05 s 4 3
Enterococcus faecium 10/96A s 6 4
Streptococcus pneumoniae WL677 s 4 3
Staphylococcus aureus M2 s 4 3
Bacillus cereus H3081.97 s 4 3
Clostridiales bacterium oral taxon 876 str. F0540 s 4 3
Bradyrhizobium sp. WSM3983 s 4 3
Bradyrhizobium elkanii USDA 3259 s 4 3
Bradyrhizobium japonicum USDA 38 s 4 3
Bradyrhizobium japonicum USDA 124 s 6 4
Bradyrhizobium japonicum USDA 6 s 4 3
Bradyrhizobium japonicum USDA 122 s 4 3
Bradyrhizobium sp. WSM1743 s 4 3
Bradyrhizobium sp. ARR65 s 4 3
Bradyrhizobium sp. Cp5.3 s 4 3
Bradyrhizobium sp. WSM4349 s 4 3
Bradyrhizobium japonicum USDA 123 s 4 3
Bradyrhizobium elkanii USDA 3254 s 4 3
Bradyrhizobium japonicum USDA 135 s 4 3
Bradyrhizobium sp. USDA 3384 s 6 4
Bradyrhizobium sp. th.b2 s 4 3
Rhizobium leguminosarum bv. viciae UPM1137 s 4 3
Bacteroides cellulosilyticus CL02T12C19 s 4 3
Bacteroides dorei CL02T12C06 s 4 3
Streptococcus parauberis KRS-02083 s 4 3
Bacteroides faecis MAJ27 s 4 3
Clostridium diolis DSM 15410 s 4 3
Paenibacillus vortex V453 s 4 3
Enterococcus faecium E1679 s 4 3
Bradyrhizobium elkanii USDA 94 s 4 3
Enterococcus gallinarum EG2 s 4 3
Enterococcus faecalis HIP11704 s 4 3
Staphylococcus aureus A6300 s 4 3
Staphylococcus aureus A9719 s 4 3
Treponema denticola ATCC 33521 s 4 3
Treponema denticola ATCC 35404 s 4 3
Staphylococcus aureus subsp. aureus VRS2 s 4 3
Staphylococcus aureus subsp. aureus VRS4 s 6 4
Staphylococcus aureus subsp. aureus VRS5 s 4 3
Staphylococcus aureus subsp. aureus VRS6 s 4 3
Staphylococcus aureus subsp. aureus VRS7 s 4 3
Staphylococcus aureus subsp. aureus VRS8 s 6 4
Staphylococcus aureus subsp. aureus VRS10 s 4 3
Staphylococcus aureus subsp. aureus VRS11a s 11 6
Staphylococcus aureus subsp. aureus VRS11b s 11 6
Bacillus cereus IS845/00 s 4 3
Staphylococcus aureus M1060 s 4 3
Bacteroides massiliensis B84634 = Timone 84634 = DSM 17679 = JCM 13223 s 4 3
Bradyrhizobium sp. WSM1417 s 4 3
Mycobacterium tuberculosis M2020 s 4 3
Streptococcus pneumoniae CGSP14 s 6 4
Bacillus cereus F837/76 s 4 3
Clostridium saccharobutylicum DSM 13864 s 4 3
Staphylococcus aureus Bmb9393 s 4 3
Nocardia brasiliensis ATCC 700358 p 4 3
Acidipropionibacterium acidipropionici ATCC 4875 s 4 3
Staphylococcus aureus subsp. aureus T0131 s 4 3
Bacillus cereus AH187 s 4 3
Corynebacterium jeikeium s 4 3
Actinoalloteichus cyanogriseus s 4 3
Actinoalloteichus cyanogriseus s 4 3
Bradyrhizobium japonicum s 4 3
Streptococcus pneumoniae s 4 3
Bradyrhizobium japonicum SEMIA 5079 s 4 3
Bacillus cereus s 4 3
Enterococcus gallinarum s 6 4
Bradyrhizobium diazoefficiens SEMIA 5080 s 4 3
Bacillus cereus s 4 3
Globicatella sulfidifaciens DSM 15739 s 4 3
Lactobacillus amylovorus DSM 16698 s 4 3
Enterococcus gallinarum s 4 3
Mesorhizobium huakuii 7653R p 4 3
Afipia sp. OHSU_II-uncloned s 4 3
Bradyrhizobium sp. OHSU_III s 4 3
Afipia sp. OHSU_I-C6 s 4 3
Afipia sp. OHSU_I-C4 s 4 3
Afipia sp. OHSU_I-uncloned s 4 3
Afipia sp. OHSU_II-C2 s 4 3
Afipia sp. OHSU_II-C1 s 4 3
Bacillus mycoides s 4 3
Bacillus thuringiensis s 4 3
Bradyrhizobium japonicum s 6 4
Clostridioides difficile s 4 3
Staphylococcus aureus subsp. aureus s 6 4
Staphylococcus aureus subsp. aureus s 4 3
Rothia mucilaginosa s 4 3
Bacillus cereus s 4 3
Bacillus cereus s 4 3
Enterococcus faecalis s 4 3
Bacillus amyloliquefaciens s 4 3
Bradyrhizobium elkanii s 4 3
Bacillus thuringiensis s 4 3
Staphylococcus aureus s 4 3
Bradyrhizobium japonicum s 4 3
Bacillus cereus s 4 3
Bacillus cereus s 4 3
Bacillus cereus s 4 3
Bifidobacterium breve s 4 3
Staphylococcus saprophyticus s 4 3
Clostridioides difficile s 4 3
Clostridioides difficile s 4 3
Clostridioides difficile s 4 3
Bacillus cereus s 4 3
Bacillus cereus s 4 3
Bacillus mycoides s 4 3
Enterococcus faecium s 4 3
Staphylococcus cohnii subsp. cohnii s 6 4
Staphylococcus cohnii subsp. cohnii s 13 7
Bradyrhizobium diazoefficiens USDA 110 s 4 3
Bradyrhizobium japonicum s 4 3
Bacillus cereus s 4 3
Bacillus cereus s 4 3
Bacillus cereus s 4 3
Bacillus cereus s 4 3
Bacillus cereus s 4 3
Bacillus cereus s 4 3
Bacillus cereus s 4 3
Bacillus cereus s 4 3
Bacillus cereus s 4 3
Bacillus cereus s 4 3
Staphylococcus aureus subsp. aureus s 4 3
Pannonibacter phragmitetus s 4 3
Staphylococcus aureus s 4 3
Staphylococcus aureus s 4 3
Enterococcus faecium s 4 3
Klebsiella pneumoniae s 4 3
Bacillus cereus s 4 3
Bacillus cereus s 4 3
Bacteroides fragilis s 4 3
Pannonibacter phragmitetus s 4 3
Bacillus mycoides s 4 3
Bradyrhizobium diazoefficiens s 4 3
Staphylococcus aureus s 4 3
Enterococcus faecium s 4 3
Enterococcus faecium s 4 3
Enterococcus faecium s 4 3
Enterococcus faecium s 4 3
Enterococcus faecium s 4 3
Enterococcus faecium s 4 3
Staphylococcus aureus subsp. aureus s 4 3
Proteus mirabilis s 4 3
Paenibacillus glucanolyticus s 4 3
Bradyrhizobium elkanii s 4 3
Bradyrhizobium elkanii s 4 3
Lactobacillus salivarius s 4 3
Staphylococcus epidermidis s 4 3
Mesorhizobium loti NZP2037 s 4 3
Bacteroides faecis MAJ27 s 4 3
Eisenbergiella tayi s 4 3
Bacillus cereus s 4 3
Bacillus mycoides s 4 3
Enterococcus gallinarum s 6 4
Enterococcus faecalis s 6 4
Enterococcus faecalis s 4 3
Enterococcus faecalis s 4 3
Enterococcus faecalis s 4 3
Enterococcus faecalis s 4 3
Bradyrhizobium japonicum s 4 3
Bacillus cereus s 4 3
Escherichia coli s 4 3
Escherichia coli s 4 3
Escherichia coli s 4 3
Escherichia coli s 4 3
Paenibacillus glucanolyticus s 4 3
Klebsiella pneumoniae s 4 3
Bradyrhizobium elkanii s 4 3
Bacillus cereus s 4 3
Bradyrhizobium canariense s 4 3
Bradyrhizobium canariense s 4 3
Bradyrhizobium canariense s 4 3
Bradyrhizobium canariense s 4 3
Bradyrhizobium canariense s 4 3
Bradyrhizobium canariense s 4 3
Bradyrhizobium canariense s 4 3
Bradyrhizobium canariense s 4 3
Bradyrhizobium japonicum s 4 3
Bradyrhizobium canariense s 4 3
Bradyrhizobium canariense s 4 3
Bradyrhizobium canariense s 4 3
Bradyrhizobium canariense s 4 3
Bradyrhizobium canariense s 4 3
Bradyrhizobium canariense s 4 3
Actinomyces nasicola s 4 3
Bacillus mycoides s 4 3
Bacillus mycoides s 4 3
Bacillus mycoides s 4 3
Bacillus mycoides s 4 3
Bacillus megaterium s 4 3
Enterococcus faecium s 4 3
Bacillus mycoides s 4 3
Bacillus cereus s 6 4
Bacillus mycoides s 4 3
Bacillus cereus s 4 3
Streptomyces scabiei s 4 3
Enterococcus faecium s 4 3
Enterococcus faecium s 4 3
Bacillus thuringiensis s 4 3
Bifidobacterium breve s 6 4
Staphylococcus aureus s 4 3
Staphylococcus aureus s 4 3
Staphylococcus aureus s 4 3
Enterococcus faecalis s 4 3
Bacillus cereus s 4 3
Bacillus cereus s 4 3
Bacillus cereus s 4 3
Bacillus cereus s 4 3
Bacillus cereus s 4 3
Bacillus cereus s 4 3
Bradyrhizobium diazoefficiens USDA 110 s 4 3
Clostridioides difficile 630 s 4 3
[Bacillus thuringiensis] serovar konkukian str. 97-27 s 4 3

*p=pathogen;s=symbiont