Metamenu

Genomes encoding eukaryotic-like proteins

PF13936 Helix-turn-helix domain

Copy number in non-pathogens:
Mean=0.56 Stddev=1.23

Genomes significantly enriched in this eukaryotic-like domain (ELD; score >= 4):

Genome Class* ELD score Number of proteins containing this domain
Lactobacillus paracasei subsp. paracasei JCM 8130 s 10 13
Lactobacillus brevis s 4 6
Lactobacillus suebicus DSM 5007 = KCTC 3549 s 4 6
Bifidobacterium breve s 6 8
Bifidobacterium longum subsp. longum s 4 6
Lactobacillus fermentum IFO 3956 s 9 12
Streptococcus dysgalactiae subsp. equisimilis GGS_124 s 6 9
Bifidobacterium longum subsp. infantis ATCC 15697 = JCM 1222 = DSM 20088 s 5 7
Bifidobacterium longum subsp. infantis 157F s 4 6
Lactobacillus casei subsp. casei ATCC 393 s 16 21
Xanthomonas oryzae pv. oryzae MAFF 311018 s 11 15
Streptococcus salivarius CCHSS3 s 6 8
Lactobacillus reuteri ATCC 53608 s 8 11
Neisseria meningitidis WUE 2594 s 6 8
Lactobacillus casei BL23 s 5 7
Neisseria meningitidis 8013 s 5 7
Bifidobacterium longum subsp. infantis s 4 6
Bifidobacterium longum subsp. infantis s 4 6
Bifidobacterium longum subsp. infantis s 4 6
Bifidobacterium longum subsp. infantis s 4 6
Bifidobacterium longum subsp. infantis s 4 6
Bifidobacterium longum subsp. infantis s 4 6
Streptococcus dysgalactiae subsp. equisimilis AC-2713 s 11 15
Lactobacillus fermentum s 6 9
[Eubacterium] rectale s 5 7
Lactobacillus brevis s 6 9
Lactobacillus brevis s 6 8
Lactobacillus brevis s 6 9
Lactobacillus brevis s 4 6
Lactobacillus brevis s 12 16
Lactobacillus brevis s 4 6
Streptococcus iniae 9117 s 7 10
Lactobacillus reuteri SD2112 s 8 11
Prevotella oris F0302 s 6 8
Peptoniphilus asaccharolyticus DSM 20463 s 6 9
Prevotella disiens FB035-09AN s 8 11
[Clostridium] citroniae WAL-19142 s 4 6
Streptococcus dysgalactiae subsp. equisimilis SK1250 s 14 19
Eubacterium ventriosum ATCC 27560 s 4 6
Streptococcus pneumoniae EU-NP05 s 5 7
Streptococcus pneumoniae GA13224 s 5 7
Streptococcus pneumoniae GA47368 s 4 6
Streptococcus pneumoniae GA49447 s 4 6
Streptococcus pneumoniae GA11184 s 5 7
Streptococcus pneumoniae 5787-06 s 4 6
Streptococcus pneumoniae GA41277 s 4 6
Streptococcus pneumoniae GA43380 s 4 6
Neisseria meningitidis 93004 s 7 10
Neisseria meningitidis NM3081 s 6 8
Neisseria meningitidis 77221 s 6 8
Neisseria meningitidis 2001212 s 5 7
Neisseria meningitidis 2007056 s 6 8
Neisseria meningitidis NM3642 s 6 8
Neisseria meningitidis NM3652 s 6 9
Neisseria meningitidis 97020 s 5 7
Neisseria meningitidis 61103 s 4 6
Neisseria meningitidis 96023 s 7 10
Neisseria meningitidis 2004090 s 6 8
Neisseria meningitidis 4119 s 4 6
Neisseria meningitidis 12888 s 6 8
Neisseria meningitidis 9757 s 7 10
Neisseria meningitidis 9506 s 6 9
Neisseria meningitidis NM418 s 5 7
Neisseria meningitidis 97014 s 6 8
Neisseria meningitidis 2002038 s 6 8
Neisseria meningitidis M13255 s 7 10
Neisseria meningitidis 2006087 s 6 8
Neisseria meningitidis 97021 s 5 7
Neisseria meningitidis 88050 s 6 8
Neisseria meningitidis NM422 s 5 7
Acinetobacter sp. NIPH 899 s 4 6
Lactobacillus fermentum Lf1 s 5 7
Amycolatopsis benzoatilytica AK 16/65 s 4 6
Ornithobacterium rhinotracheale DSM 15997 s 5 7
Lactobacillus fermentum 3872 s 13 17
Piscirickettsia salmonis AUSTRAL-005 s 32 40
Ornithobacterium rhinotracheale ORT-UMN 88 s 6 8
Ornithobacterium rhinotracheale H06-030791 s 4 6
Lactobacillus suebicus DSM 5007 = KCTC 3549 s 4 6
Acinetobacter baumannii 348935 s 4 6
Acinetobacter sp. 230853 s 5 7
Streptococcus pneumoniae SP11-BS70 s 4 6
Streptococcus salivarius s 6 9
Shigella dysenteriae 1012 s 10 13
Streptococcus ictaluri 707-05 s 12 16
Clostridium sp. D5 s 5 7
Subdoligranulum sp. 4_3_54A2FAA s 5 7
Prevotella sp. C561 s 6 9
Lactobacillus crispatus FB077-07 s 6 8
Lactobacillus crispatus FB049-03 s 6 8
Piscirickettsia salmonis LF-89 = ATCC VR-1361 s 6 8
Streptococcus suis R61 s 6 8
Lactobacillus mucosae LM1 s 5 7
Neisseria meningitidis OX99.30304 s 5 7
Neisseria meningitidis M0579 s 6 8
Neisseria meningitidis CU385 s 6 8
Neisseria meningitidis M01-240013 s 4 6
Acinetobacter lwoffii WJ10621 s 4 6
Lactobacillus coryniformis subsp. coryniformis CECT 5711 s 11 15
Lactobacillus brevis AG48 s 14 18
Neisseria meningitidis M0579 s 6 8
Corynebacterium sp. HFH0082 s 4 6
Psychrobacter sp. AC24 s 4 6
Bifidobacterium longum subsp. infantis ATCC 15697 = JCM 1222 = DSM 20088 s 5 7
Xanthomonas oryzae pv. oryzae PXO99A s 11 15
Lactobacillus reuteri I5007 s 9 12
Streptococcus dysgalactiae subsp. equisimilis ATCC 12394 s 14 19
Neisseria meningitidis alpha710 s 5 7
Streptococcus pyogenes MGAS8232 s 8 11
Streptococcus pyogenes MGAS10394 s 7 10
Neisseria meningitidis 053442 s 5 7
Streptococcus anginosus C238 s 4 6
Lactobacillus delbrueckii subsp. bulgaricus ND02 s 4 6
Lactobacillus fermentum CECT 5716 s 9 12
Neisseria meningitidis M01-240355 s 4 6
Neisseria meningitidis M01-240149 s 4 6
Neisseria meningitidis M04-240196 s 6 9
Neisseria meningitidis H44/76 s 7 10
Acinetobacter baumannii 1276470-132 s 5 7
Neisseria meningitidis s 8 11
Alteromonadaceae bacterium Bs12 s 4 6
Streptococcus pyogenes s 16 21
Exiguobacterium aurantiacum DSM 6208 s 6 9
Endozoicomonas numazuensis s 4 6
Francisella philomiragia s 8 11
Piscirickettsia salmonis s 31 39
Piscirickettsia salmonis s 14 18
Lactobacillus brevis s 6 8
Lactobacillus helveticus s 5 7
Streptococcus anginosus s 4 6
Bifidobacterium longum subsp. infantis s 5 7
Lactobacillus plantarum s 5 7
Streptococcus iniae s 6 9
Streptococcus salivarius s 4 6
Lactobacillus fermentum s 4 6
Lactobacillus plantarum s 6 9
Lactobacillus fermentum s 15 20
Acinetobacter baumannii s 5 7
Lactobacillus brevis s 6 8
Streptococcus pyogenes s 6 9
Lactobacillus plantarum s 4 6
Xanthomonas oryzae pv. oryzae s 14 18
Piscirickettsia salmonis s 5 7
Lactobacillus rhamnosus s 5 7
Lactobacillus brevis s 6 9
Lactobacillus reuteri s 10 14
Lactobacillus paracasei s 14 19
Lactobacillus crispatus s 5 7
Endozoicomonas ascidiicola s 5 7
Lactobacillus helveticus s 5 7
Neisseria meningitidis s 8 11
Lactobacillus plantarum s 10 13
Lactobacillus gallinarum s 10 13
Acinetobacter baumannii s 5 7
Xanthomonas oryzae pv. oryzae s 16 21
Lactobacillus plantarum s 6 8
Xanthomonas oryzae pv. oryzae s 6 9
Xanthomonas oryzae pv. oryzae s 12 16
Xanthomonas oryzae pv. oryzae s 15 20
Xanthomonas oryzae pv. oryzae s 16 21
Xanthomonas oryzae pv. oryzae s 11 15
Xanthomonas oryzae pv. oryzae s 13 17
Xanthomonas oryzae pv. oryzae s 13 17
Xanthomonas oryzae pv. oryzae s 13 17
Piscirickettsia salmonis s 36 45
Piscirickettsia salmonis s 30 38
Streptococcus infantarius s 4 6
Streptococcus equinus s 6 8
Piscirickettsia salmonis s 15 20
Piscirickettsia salmonis s 15 20
Piscirickettsia salmonis s 14 18
Piscirickettsia salmonis s 14 19
Piscirickettsia salmonis s 19 25
Piscirickettsia salmonis s 31 39
Piscirickettsia salmonis s 32 40
Piscirickettsia salmonis s 28 36
Piscirickettsia salmonis s 27 35
Piscirickettsia salmonis s 31 39
Piscirickettsia salmonis s 33 42
Piscirickettsia salmonis s 28 36
Piscirickettsia salmonis s 28 36
Piscirickettsia salmonis s 32 41
Lactobacillus paracasei s 14 19
Frondihabitans sp. PAMC 28766 s 5 7
Lactobacillus brevis s 9 12
Lactobacillus brevis s 7 10
Lactobacillus brevis s 10 13
Lactobacillus plantarum s 4 6
Lactobacillus plantarum s 4 6
Lactobacillus plantarum s 4 6
[Clostridium] stercorarium subsp. leptospartum DSM 9219 s 5 7
Lactobacillus plantarum s 5 7
Lactobacillus johnsonii s 6 8
Lactobacillus johnsonii s 6 8
Erysipelotrichaceae bacterium I46 s 6 9
Lactobacillus brevis s 10 13
Neisseria meningitidis s 4 6
Neisseria meningitidis s 7 10
Neisseria sicca s 12 16
Lactococcus lactis subsp. lactis s 5 7
Lactobacillus plantarum s 11 15
Gilliamella apicola s 6 8
Gilliamella apicola s 5 7
Gilliamella apicola s 4 6
Gilliamella apicola s 10 13
Vibrio vulnificus s 4 6
[Clostridium] innocuum s 7 10
Lactobacillus plantarum s 4 6
Lactobacillus crispatus s 7 10
Lactobacillus plantarum s 6 8
Lactobacillus plantarum s 5 7
Lactobacillus plantarum s 6 8
Lactobacillus fermentum s 4 6
Lactobacillus reuteri s 6 8
Lactobacillus reuteri s 4 6
Lactobacillus reuteri s 4 6
Lactobacillus reuteri s 4 6
Lactobacillus reuteri s 5 7
Lactobacillus reuteri s 5 7
Lactobacillus reuteri s 12 16
Lactobacillus plantarum s 5 7
Lactobacillus plantarum s 5 7
Lactobacillus plantarum s 5 7
Lactobacillus fermentum s 8 11
Lactobacillus plantarum s 9 12
Streptococcus iniae s 7 10
Corynebacterium jeikeium s 4 6
Lactobacillus fermentum s 6 9
Lactobacillus brevis s 8 11
Lactobacillus reuteri s 5 7
Lactobacillus reuteri s 10 14
Bifidobacterium longum subsp. infantis s 5 7
Lactobacillus plantarum s 6 8
Lactobacillus reuteri s 6 8
Lactobacillus fermentum s 23 30
Streptococcus iniae s 6 8
Lactobacillus brevis s 10 13
Lactobacillus brevis s 10 14
Lactobacillus gasseri s 9 12
Lactobacillus fermentum s 6 8
Lactobacillus fermentum s 4 6
Streptococcus mitis B6 s 36 45
Neisseria meningitidis MC58 s 10 14
Lactobacillus paracasei ATCC 334 s 21 27

*p=pathogen;s=symbiont