Metamenu
University of Vienna
Research network CMM
Dept of Microbiology and Ecosystem Science
CUBE
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SIMAP
Gepard
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Eukaryotic like proteins
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Genome: Shigella flexneri VA-6
Taxonomyid:
766145
Class: s (p=pathogen;s=symbiont)
Domain:
PF13276
Copy number in non-pathogens:
Mean=0.80 Stddev=1.53
Proteins containing this domain:
accession
genenames
locustags
description
WP_000336672.1
transposase
WP_000336726.1
transposase
WP_000349035.1
transposase
WP_000376502.1
integrase
WP_000878225.1
transposase
WP_000878230.1
transposase
WP_000887786.1
transposase
WP_000887797.1
transposase
WP_001128930.1
transposase
WP_001390570.1
transposase
WP_005026799.1
transposase
WP_005061866.1
transposase
WP_005065610.1
transposase
WP_005065783.1
transposase
WP_005066630.1
transposase
WP_005066967.1
transposase
WP_005067687.1
transposase
WP_005067879.1
transposase
WP_005067961.1
transposase
WP_005067991.1
transposase
WP_005071376.1
transposase
WP_005072042.1
transposase
WP_005114833.1
transposase
WP_005114900.1
transposase
WP_005114934.1
transposase
WP_005114962.1
transposase
WP_005115100.1
transposase
WP_005115169.1
transposase
WP_005115550.1
transposase
WP_024261205.1
transposase
WP_024261206.1
transposase
WP_024261207.1
transposase
WP_024261209.1
transposase
WP_024261211.1
transposase
WP_032157110.1
transposase
WP_032157165.1
transposase
WP_050544128.1
transposase
WP_064716617.1
integrase
WP_064716618.1
transposase
Release announcements
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News
EffectiveDB genome mode fixed
24.11.20
EFFECTIVEELD 5.2: EUKARYOTIC-LIKE DOMAIN PREDICTION UPGRADED TO PFAM 31
20.08.17
EffectiveELD 5.1: Eukaryotic-like domain prediction upgraded to Pfam 29
24.06.16
Latest publications
EffectiveDB-updates and novel features for a better annotation of bacterial secreted proteins and Type III, IV, VI secretion systems.
Prediction of microbial phenotypes based on comparative genomics.
Contact
+43 1 4277 76681
+43 1 4277 876681
contact.cube@univie.ac.at