Metamenu
University of Vienna
Research network CMM
Dept of Microbiology and Ecosystem Science
CUBE
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SIMAP
Gepard
GenSkew
ConsPred
PICA
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Eukaryotic like proteins
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Genome: Shigella flexneri 2002017
Taxonomyid:
591020
Class: s (p=pathogen;s=symbiont)
Domain:
PF13276
Copy number in non-pathogens:
Mean=0.80 Stddev=1.53
Proteins containing this domain:
accession
genenames
locustags
description
WP_000085534.1
transposase
WP_000261567.1
transposase
WP_000336644.1
transposase
WP_000336673.1
transposase
WP_000336752.1
transposase
WP_000376489.1
transposase
WP_000376502.1
integrase
WP_000376511.1
transposase
WP_000376512.1
transposase
WP_000866368.1
hypothetical protein
WP_000866383.1
transposase
WP_000878219.1
transposase
WP_000878227.1
transposase
WP_000878228.1
transposase
WP_000878230.1
transposase
WP_000887797.1
transposase
WP_000887800.1
transposase
WP_000940373.1
transposase
WP_000940385.1
transposase
WP_000940395.1
transposase
WP_000940405.1
transposase
WP_000940414.1
transposase
WP_000940416.1
transposase
WP_000940417.1
transposase
WP_000940427.1
transposase
WP_000940428.1
transposase
WP_000940431.1
transposase
WP_000940432.1
transposase
WP_000940443.1
transposase
WP_001128930.1
transposase
WP_001128939.1
transposase
WP_001128955.1
transposase
WP_001256324.1
transposase
WP_005047458.1
transposase
WP_005048971.1
transposase
WP_005049828.1
transposase
WP_005051907.1
transposase
WP_005051939.1
transposase
WP_005084154.1
transposase
WP_005084629.1
transposase
WP_005087764.1
transposase
WP_005088262.1
transposase
WP_005098594.1
transposase
WP_005100286.1
transposase
WP_005119312.1
transposase
WP_005119581.1
transposase
WP_011110550.1
IS150 orfB
WP_014532190.1
transposase
WP_014532233.1
transposase
WP_014532249.1
transposase
WP_014532268.1
integrase
WP_014532273.1
transposase
WP_014532379.1
transposase
WP_015683202.1
transposase
WP_024259231.1
transposase
WP_024259898.1
transposase
WP_024259902.1
transposase
Release announcements
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News
EffectiveDB genome mode fixed
24.11.20
EFFECTIVEELD 5.2: EUKARYOTIC-LIKE DOMAIN PREDICTION UPGRADED TO PFAM 31
20.08.17
EffectiveELD 5.1: Eukaryotic-like domain prediction upgraded to Pfam 29
24.06.16
Latest publications
EffectiveDB-updates and novel features for a better annotation of bacterial secreted proteins and Type III, IV, VI secretion systems.
Prediction of microbial phenotypes based on comparative genomics.
Contact
+43 1 4277 76681
+43 1 4277 876681
contact.cube@univie.ac.at