Effective results for Streptococcus mitis bv. 2 str. SK95 (eggnog40)

Summary

Number of putative secreted proteins: 101
- Predicted by T4SEpre: 102
- Predicted by EffectiveELD: 10 eukaryotic-like domains, contained in 19 proteins (1 high, 18 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): (Type IV)

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
1000588.HMPREF9965_1141+ER
1000588.HMPREF9965_1343+ER
1000588.HMPREF9965_1342+ER
1000588.HMPREF9965_1341+ER
1000588.HMPREF9965_0106(PF00344)mitochondrial
1000588.HMPREF9965_1545+mitochondrial
1000588.HMPREF9965_0178+ER
1000588.HMPREF9965_1984(PF03644)(mitochondrial)
1000588.HMPREF9965_0599+ER
1000588.HMPREF9965_0908+(mitochondrial); (plastid)
1000588.HMPREF9965_1622+ER
1000588.HMPREF9965_0578PF02916ER
1000588.HMPREF9965_0026+(mitochondrial)
1000588.HMPREF9965_0212+(mitochondrial)
1000588.HMPREF9965_0745+ER
1000588.HMPREF9965_1157+ER
1000588.HMPREF9965_0239+ER
1000588.HMPREF9965_1489(PF03596)ER
1000588.HMPREF9965_1058+(mitochondrial)
1000588.HMPREF9965_0983+ER
1000588.HMPREF9965_1582(PF04991)(ER)
1000588.HMPREF9965_0278(PF05257)ER
1000588.HMPREF9965_0182+ER
1000588.HMPREF9965_0868+ER
1000588.HMPREF9965_0882+ER
1000588.HMPREF9965_1055+ER
1000588.HMPREF9965_0501(PF05257)ER
1000588.HMPREF9965_1274(PF14311)ER
1000588.HMPREF9965_0252+ER
1000588.HMPREF9965_1863(PF00344)mitochondrial
1000588.HMPREF9965_0317+ER
1000588.HMPREF9965_1892(PF03083)ER
1000588.HMPREF9965_0453+(mitochondrial)
1000588.HMPREF9965_0306+mitochondrial; (mitochondrial)
1000588.HMPREF9965_0936+ER
1000588.HMPREF9965_0203(PF09683)ER
1000588.HMPREF9965_0680+mitochondrial
1000588.HMPREF9965_0433+(mitochondrial)
1000588.HMPREF9965_0264+(PF05257)
1000588.HMPREF9965_2052+not used
1000588.HMPREF9965_1504+
1000588.HMPREF9965_1508+
1000588.HMPREF9965_0692+
1000588.HMPREF9965_0107+
1000588.HMPREF9965_0102+
1000588.HMPREF9965_1541+
1000588.HMPREF9965_0144+
1000588.HMPREF9965_0001+
1000588.HMPREF9965_0516+
1000588.HMPREF9965_1844+
1000588.HMPREF9965_1364(PF01633)
1000588.HMPREF9965_1579(PF04991)
1000588.HMPREF9965_0970+
1000588.HMPREF9965_1371+
1000588.HMPREF9965_0157(PF03083)
1000588.HMPREF9965_2022+not used
1000588.HMPREF9965_1761+
1000588.HMPREF9965_1815(PF01633)
1000588.HMPREF9965_1810+
1000588.HMPREF9965_0631+
1000588.HMPREF9965_0039+
1000588.HMPREF9965_0740+
1000588.HMPREF9965_1776+
1000588.HMPREF9965_1771+
1000588.HMPREF9965_0602+
1000588.HMPREF9965_0730+
1000588.HMPREF9965_1948+
1000588.HMPREF9965_1496+
1000588.HMPREF9965_0618+
1000588.HMPREF9965_0724+
1000588.HMPREF9965_1551(PF05257)
1000588.HMPREF9965_1951+
1000588.HMPREF9965_2026(PF03596)
1000588.HMPREF9965_1719+
1000588.HMPREF9965_0283+
1000588.HMPREF9965_0067+
1000588.HMPREF9965_1927+
1000588.HMPREF9965_2036+
1000588.HMPREF9965_1724+
1000588.HMPREF9965_1580(PF04991)
1000588.HMPREF9965_1851+not used
1000588.HMPREF9965_0855+
1000588.HMPREF9965_0276+
1000588.HMPREF9965_0887+
1000588.HMPREF9965_0643+
1000588.HMPREF9965_1856+
1000588.HMPREF9965_1852+
1000588.HMPREF9965_0258+
1000588.HMPREF9965_2062+
1000588.HMPREF9965_0403+
1000588.HMPREF9965_0798+
1000588.HMPREF9965_0139+
1000588.HMPREF9965_1066+
1000588.HMPREF9965_1671+
1000588.HMPREF9965_0304+
1000588.HMPREF9965_1538+
1000588.HMPREF9965_1668+
1000588.HMPREF9965_1400+
1000588.HMPREF9965_1401+
1000588.HMPREF9965_1085+
1000588.HMPREF9965_1240+

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: NO (FDR = 0.5 %)
  • Functional Type III secretion system: N.D.
  • Functional Type IV secretion system: YES (FDR = 7.2 %)
    Estimated copy number = 0 (0/0 KEGG proteins)
  • Functional Type VI secretion system: N.D.

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================