Effective results for Helicobacter bizzozeronii CIII-1 (eggnog40)

Summary

Number of putative secreted proteins: 109
- Predicted by T4SEpre: 70
- Predicted by EffectiveELD: 14 eukaryotic-like domains, contained in 57 proteins (0 high, 57 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): Type IV, (Type VI)

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
1002804.HBZC1_01480+ER
1002804.HBZC1_12630+ER
1002804.HBZC1_05130+ER
1002804.HBZC1_10750(PF03382)(mitochondrial)
1002804.HBZC1_09810+(mitochondrial)
1002804.HBZC1_18370+ER
1002804.HBZC1_04860(PF02844) (PF02843)(mitochondrial)
1002804.HBZC1_03660(PF01535)(ER)
1002804.HBZC1_07230(PF08238)ER
1002804.HBZC1_03200+ER
1002804.HBZC1_07220(PF08238)ER
1002804.HBZC1_04790(PF01755)mitochondrial
1002804.HBZC1_00120(PF08238)ER
1002804.HBZC1_01190+ER
1002804.HBZC1_06690(PF08238)ER
1002804.HBZC1_08270+(ER)
1002804.HBZC1_00910(PF08238)ER
1002804.HBZC1_15640(PF02844)(mitochondrial)
1002804.HBZC1_06170+ER
1002804.HBZC1_02430(PF08238)ER
1002804.HBZC1_15650(PF02843)ER; (ER)
1002804.HBZC1_03870+ER
1002804.HBZC1_10540+ER
1002804.HBZC1_15250(PF08238)ER
1002804.HBZC1_00900(PF08238)ER
1002804.HBZC1_09700(PF08238)ER
1002804.HBZC1_10030(PF11074)mitochondrial; (mitochondrial)
1002804.HBZC1_11140(PF08238)ER
1002804.HBZC1_10370+ER
1002804.HBZC1_17360+(PF03235)
1002804.HBZC1_01280+(mitochondrial)
1002804.HBZC1_09910+(mitochondrial)
1002804.HBZC1_04010+(plastid)
1002804.HBZC1_17310+(mitochondrial)
1002804.HBZC1_10760(PF03235)(plastid)
1002804.HBZC1_04950(PF04998) (PF00562)
1002804.HBZC1_09590+
1002804.HBZC1_17190+
1002804.HBZC1_04940(PF04998)
1002804.HBZC1_04830(PF13507)
1002804.HBZC1_10010(PF08238)
1002804.HBZC1_08430(PF03235)
1002804.HBZC1_16420(PF08238)
1002804.HBZC1_15770+
1002804.HBZC1_07880(PF08238)
1002804.HBZC1_04840(PF13507)
1002804.HBZC1_17160+
1002804.HBZC1_15500(PF03382)
1002804.HBZC1_18050+
1002804.HBZC1_15720(PF01687)
1002804.HBZC1_02900(PF01555)
1002804.HBZC1_08610(PF03382)
1002804.HBZC1_07980(PF03235)
1002804.HBZC1_15490(PF03382)
1002804.HBZC1_16620(PF01555)
1002804.HBZC1_15710(PF01687)
1002804.HBZC1_01980(PF03382)
1002804.HBZC1_17020(PF01142)
1002804.HBZC1_08970(PF01555)
1002804.HBZC1_14120+
1002804.HBZC1_17380(PF03235)
1002804.HBZC1_14380(PF01555)
1002804.HBZC1_01410(PF01555)
1002804.HBZC1_02940+
1002804.HBZC1_11710+
1002804.HBZC1_14570+
1002804.HBZC1_00890(PF08238)
1002804.HBZC1_03780+
1002804.HBZC1_05880+
1002804.HBZC1_04930(PF03382)
1002804.HBZC1_08200+
1002804.HBZC1_07030+
1002804.HBZC1_00050+
1002804.HBZC1_06300+
1002804.HBZC1_01740+
1002804.HBZC1_04210+
1002804.HBZC1_12100(PF01555)
1002804.HBZC1_04770(PF01755)
1002804.HBZC1_08860+
1002804.HBZC1_18470(PF01555)
1002804.HBZC1_04000+
1002804.HBZC1_09310+
1002804.HBZC1_09980+
1002804.HBZC1_00690+
1002804.HBZC1_11950+
1002804.HBZC1_00260(PF01142)
1002804.HBZC1_15480(PF03382)
1002804.HBZC1_16260+
1002804.HBZC1_17130+
1002804.HBZC1_09990+
1002804.HBZC1_06120+
1002804.HBZC1_15920(PF01555)
1002804.HBZC1_00270(PF01142)
1002804.HBZC1_10310+
1002804.HBZC1_15470+
1002804.HBZC1_16410(PF08238)
1002804.HBZC1_09670+
1002804.HBZC1_08650(PF03235)
1002804.HBZC1_17120+
1002804.HBZC1_07460(PF01755)
1002804.HBZC1_04960(PF00562)
1002804.HBZC1_01700+
1002804.HBZC1_07600(PF03382)
1002804.HBZC1_16400(PF03235)
1002804.HBZC1_00730+
1002804.HBZC1_01290+
1002804.HBZC1_02380+
1002804.HBZC1_08390+
1002804.HBZC1_03130(PF01142)

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: YES (FDR = 0.5 %)
  • Functional Type III secretion system: NO (FDR = 12.5 %)
  • Functional Type IV secretion system: YES (FDR = 7.2 %)
    Estimated copy number = 0.8 (8/10 KEGG proteins)
  • Functional Type VI secretion system: YES (FDR = 7.7 %)
    Estimated copy number = 0.25 (2/8 KEGG proteins)

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================