Effective results for Gordonia alkanivorans NBRC 16433 (eggnog40)

Summary

Number of putative secreted proteins: 87
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 23 eukaryotic-like domains, contained in 87 proteins (2 high, 85 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
1027371.GOALK_050_00620(PF00756)ER
1027371.GOALK_056_00610(PF03583)ER
1027371.GOALK_029_00320(PF00756)(mitochondrial); plastid
1027371.GOALK_097_00510(PF09995)(mitochondrial)
1027371.GOALK_029_00450(PF08310)(mitochondrial); plastid
1027371.GOALK_040_00070(PF13810)ER
1027371.GOALK_045_00850(PF13810)ER
1027371.GOALK_016_00740(PF13810)ER
1027371.GOALK_050_00060(PF00756)(mitochondrial)
1027371.GOALK_038_00670(PF03583)ER
1027371.GOALK_023_00240(PF13810)ER
1027371.GOALK_050_03170(PF03583)ER
1027371.GOALK_029_00530(PF14494)ER
1027371.GOALK_056_00500(PF13622)(mitochondrial)
1027371.GOALK_056_00340(PF00756)ER
1027371.GOALK_045_00720(PF00756)ER
1027371.GOALK_056_01280(PF03583)ER
1027371.GOALK_120_00300PF05007ER
1027371.GOALK_120_01790(PF08326)mitochondrial; (mitochondrial)
1027371.GOALK_050_01340(PF00756)ER
1027371.GOALK_097_01320(PF00756)ER
1027371.GOALK_060_01090(PF03583)(mitochondrial); mitochondrial
1027371.GOALK_097_01710(PF00756)ER
1027371.GOALK_072_00980(PF14232) (PF14231)
1027371.GOALK_056_01040(PF08310) (PF00756)
1027371.GOALK_089_00180(PF00756)(ER)
1027371.GOALK_026_00470(PF02560)(plastid)
1027371.GOALK_048_00200(PF09995)(mitochondrial)
1027371.GOALK_056_00270(PF00756)(mitochondrial)
1027371.GOALK_029_00060(PF14232) (PF14231)
1027371.GOALK_050_00360(PF03583)
1027371.GOALK_060_00700(PF02224)
1027371.GOALK_056_00490(PF13622)
1027371.GOALK_056_01060(PF00756)
1027371.GOALK_050_03130(PF03583)
1027371.GOALK_023_00250(PF17048)
1027371.GOALK_047_00420(PF13622)
1027371.GOALK_045_00200(PF09995)
1027371.GOALK_029_00490(PF09995)
1027371.GOALK_029_00010(PF07958)
1027371.GOALK_087_00281(PF09995)
1027371.GOALK_016_01090(PF09995)
1027371.GOALK_018_00050(PF03583)
1027371.GOALK_077_00770(PF04760)not used
1027371.GOALK_050_03150(PF03583)
1027371.GOALK_109_00070(PF13622)
1027371.GOALK_029_00390(PF09995)
1027371.GOALK_029_00020(PF12471)
1027371.GOALK_046_00680(PF09995)
1027371.GOALK_131_00200(PF00756)
1027371.GOALK_117_00380(PF09995)
1027371.GOALK_016_00750(PF13622)
1027371.GOALK_060_00560(PF01896)
1027371.GOALK_030_00070(PF13622)
1027371.GOALK_051_00020(PF03583)
1027371.GOALK_099_00770(PF13622)
1027371.GOALK_026_00980(PF03583)
1027371.GOALK_033_00460(PF00756)
1027371.GOALK_116_00260(PF08310)
1027371.GOALK_097_02860(PF09752)
1027371.GOALK_026_00530(PF09995)
1027371.GOALK_014_00310(PF13622)
1027371.GOALK_068_00080(PF00756)
1027371.GOALK_050_02480(PF13622)
1027371.GOALK_120_01050(PF11927)
1027371.GOALK_110_00630(PF09995)
1027371.GOALK_029_00510(PF08310)
1027371.GOALK_029_00500(PF09995)
1027371.GOALK_099_00390(PF09995)
1027371.GOALK_120_01070(PF11927)
1027371.GOALK_060_00860PF00910
1027371.GOALK_068_00500(PF04760)
1027371.GOALK_110_00210(PF09995)
1027371.GOALK_079_00170(PF09995)
1027371.GOALK_040_00480(PF04760)
1027371.GOALK_050_00930(PF00756)
1027371.GOALK_060_00100(PF00070)
1027371.GOALK_048_00460(PF09995)
1027371.GOALK_131_00090(PF09995)
1027371.GOALK_033_00570(PF09995)
1027371.GOALK_097_02480(PF09995)
1027371.GOALK_050_00340(PF03583)
1027371.GOALK_117_00160(PF02224)
1027371.GOALK_056_00700(PF02560)
1027371.GOALK_093_00090(PF08310)
1027371.GOALK_072_01130(PF01896)
1027371.GOALK_023_00180(PF08354)

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: NO (FDR = 0.5 %)
  • Functional Type III secretion system: N.D.
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: N.D.

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================