Effective results for Pseudoxanthomonas spadix BD-a59 (eggnog40)

Summary

Number of putative secreted proteins: 68
- Predicted by T4SEpre: 56
- Predicted by EffectiveELD: 9 eukaryotic-like domains, contained in 20 proteins (5 high, 15 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): Type IV

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
1045855.DSC_09615+ER
1045855.DSC_05325(PF13202)(ER); plastid
1045855.DSC_08695PF10712mitochondrial
1045855.DSC_05210+mitochondrial; (mitochondrial)
1045855.DSC_14510+ER
1045855.DSC_01575+ER
1045855.DSC_14385(PF13202)ER
1045855.DSC_11265+ER
1045855.DSC_00370(PF13606)ER
1045855.DSC_00745(PF13202)ER
1045855.DSC_06160(PF13202)ER
1045855.DSC_00595PF11074(mitochondrial)
1045855.DSC_00750(PF13202)ER
1045855.DSC_15580+ER
1045855.DSC_14240(PF04505)(ER); ER
1045855.DSC_11930(PF01764)ER
1045855.DSC_04050+(ER)
1045855.DSC_15055(PF13202)ER
1045855.DSC_09730+ER
1045855.DSC_15060(PF13202)ER
1045855.DSC_08735+(mitochondrial)
1045855.DSC_03310+(plastid)
1045855.DSC_09310+(plastid)
1045855.DSC_03240+(plastid)
1045855.DSC_04140+(plastid)
1045855.DSC_04210+
1045855.DSC_10540+
1045855.DSC_12545+
1045855.DSC_05915(PF01764)
1045855.DSC_00185+
1045855.DSC_01925(PF01764)
1045855.DSC_09075+
1045855.DSC_12505PF17067not used
1045855.DSC_14580+
1045855.DSC_03970+
1045855.DSC_08085(PF04768)
1045855.DSC_04815+
1045855.DSC_14715+
1045855.DSC_01785+
1045855.DSC_02545+
1045855.DSC_11255+
1045855.DSC_12665+
1045855.DSC_10820+
1045855.DSC_10825+
1045855.DSC_04290+
1045855.DSC_14830+
1045855.DSC_04640+
1045855.DSC_03065+
1045855.DSC_15710PF00018not used
1045855.DSC_04265+
1045855.DSC_01610+
1045855.DSC_07915+
1045855.DSC_02985+
1045855.DSC_05790+
1045855.DSC_08315+
1045855.DSC_08480+
1045855.DSC_11910PF11074
1045855.DSC_14245(PF04505)
1045855.DSC_02385+
1045855.DSC_13670+
1045855.DSC_11785+
1045855.DSC_00095(PF13606)
1045855.DSC_04230+
1045855.DSC_14420+
1045855.DSC_10040+
1045855.DSC_10045+
1045855.DSC_07140+
1045855.DSC_12145+

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: YES (FDR = 0.5 %)
  • Functional Type III secretion system: NO (FDR = 12.5 %)
  • Functional Type IV secretion system: YES (FDR = 7.2 %)
    Estimated copy number = 0.6 (6/10 KEGG proteins)
  • Functional Type VI secretion system: NO (FDR = 7.7 %)

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================