Effective results for Staphylococcus epidermidis RP62A (eggnog40)

Summary

Number of putative secreted proteins: 43
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 13 eukaryotic-like domains, contained in 43 proteins (12 high, 31 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
176279.SERP0761PF05257ER
176279.SERP1370(PF03596)(ER)
176279.SERP1811(PF00344)(mitochondrial)
176279.SERP2263PF05257ER
176279.SERP0422PF05257ER; (ER)
176279.SERP2120PF05257ER
176279.SERP1884PF05257ER
176279.SERP2221(PF03596)ER; (ER)
176279.SERP1964(PF11070)ER
176279.SERP1955(PF06039)(ER)
176279.SERP2280(PF00344)mitochondrial
176279.SERP0318PF05257(mitochondrial)
176279.SERP2136PF05257(ER)
176279.SERP1880PF05257(ER)
176279.SERP0380(PF02371)
176279.SERP0544(PF02371)
176279.SERP2412(PF06039)
176279.SERP0991(PF02371)
176279.SERP1730(PF02371)
176279.SERP1737(PF03630)
176279.SERP2168(PF06039)
176279.SERP1220(PF00398)
176279.SERP1221(PF13427)
176279.SERP0260(PF02371)
176279.SERP1911(PF02371)
176279.SERP0404(PF05495)
176279.SERP2509(PF13427)
176279.SERP2312(PF06039)
176279.SERP2013PF08771
176279.SERP1650PF05257
176279.SERP0131(PF00398)
176279.SERP2510(PF00398)
176279.SERP2477(PF08357)
176279.SERP0697(PF02371)
176279.SERP0577(PF02371)
176279.SERP1348(PF02371)
176279.SERP1343(PF00398)
176279.SERP1344(PF13427)
176279.SERP0100PF05257
176279.SERP1509PF04275
176279.SERP0565(PF02371)
176279.SERP0558(PF02371)
176279.SERP0160(PF02371)

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: NO (FDR = 0.5 %)
  • Functional Type III secretion system: N.D.
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: N.D.

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================