Effective results for Brucella melitensis bv. 1 str. 16M (eggnog40)

Summary

Number of putative secreted proteins: 62
- Predicted by T4SEpre: 69
- Predicted by EffectiveELD: 6 eukaryotic-like domains, contained in 8 proteins (0 high, 8 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): Type IV

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
224914.BAWG_1062(PF06455)ER
224914.BAWG_1125+ER
224914.BAWG_0756+(ER)
224914.BAWG_2758+ER; (ER)
224914.BAWG_1237+mitochondrial
224914.BAWG_2588+ER
224914.BAWG_2507+ER
224914.BAWG_1143+(mitochondrial); mitochondrial
224914.BAWG_1155+ER
224914.BAWG_1526+ER; (ER)
224914.BAWG_2576+ER
224914.BAWG_2372+ER
224914.BAWG_1448+ER
224914.BAWG_1517+(mitochondrial); (plastid)
224914.BAWG_0496+ER
224914.BAWG_2400+mitochondrial; (mitochondrial)
224914.BAWG_0616+(mitochondrial)
224914.BAWG_1244+(PF01442)
224914.BAWG_2441+(mitochondrial)
224914.BAWG_0983(PF13207)(mitochondrial)
224914.BAWG_2925+(mitochondrial)
224914.BAWG_0547+(mitochondrial)
224914.BAWG_2397(PF01755)
224914.BAWG_2398+
224914.BAWG_0828+
224914.BAWG_0019(PF09731)
224914.BAWG_2672+
224914.BAWG_1262+
224914.BAWG_1860+
224914.BAWG_2282+
224914.BAWG_1257+
224914.BAWG_2850+
224914.BAWG_2100+
224914.BAWG_0991+
224914.BAWG_0183+
224914.BAWG_2521+
224914.BAWG_2704+
224914.BAWG_2934+
224914.BAWG_2481+
224914.BAWG_0952+
224914.BAWG_0887(PF01755)
224914.BAWG_1174+
224914.BAWG_0316+
224914.BAWG_1704+
224914.BAWG_0237+
224914.BAWG_2548+
224914.BAWG_2740+
224914.BAWG_2756+
224914.BAWG_2752+
224914.BAWG_3019+
224914.BAWG_1507+
224914.BAWG_2213(PF07930)
224914.BAWG_2710+
224914.BAWG_2358+
224914.BAWG_0807+
224914.BAWG_1046+
224914.BAWG_1854+
224914.BAWG_1428+
224914.BAWG_2713+
224914.BAWG_1284+
224914.BAWG_0623(PF01755)
224914.BAWG_0530+

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: YES (FDR = 0.5 %)
  • Functional Type III secretion system: NO (FDR = 12.5 %)
  • Functional Type IV secretion system: YES (FDR = 7.2 %)
    Estimated copy number = 0.7 (7/10 KEGG proteins)
  • Functional Type VI secretion system: NO (FDR = 7.7 %)

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================