Effective results for Shewanella piezotolerans WP3 (eggnog40)

Summary

Number of putative secreted proteins: 72
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 18 eukaryotic-like domains, contained in 72 proteins (2 high, 70 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): Type VI

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
225849.swp_3545(PF14864) (PF14863)ER
225849.swp_4168(PF14864) (PF14863)ER; (ER)
225849.swp_4376(PF14864) (PF14863)ER
225849.swp_1820(PF03553)(mitochondrial); plastid
225849.swp_2110(PF03553)ER
225849.swp_4996(PF00849)ER
225849.swp_2178(PF03553)ER
225849.swp_3944(PF02460)ER
225849.swp_0332(PF01103)ER
225849.swp_0944(PF03553)ER
225849.swp_2312(PF09317)ER
225849.swp_2783(PF01103)ER
225849.swp_4477(PF00245)ER
225849.swp_3470(PF03553)ER
225849.swp_0596(PF01103)ER
225849.swp_2518(PF00849)ER
225849.swp_4598(PF00849)mitochondrial
225849.swp_0605(PF01103)ER
225849.swp_4023(PF03553)ER
225849.swp_4730(PF06468)ER
225849.swp_4731(PF06468)ER; (ER)
225849.swp_2992(PF08329)ER
225849.swp_2454(PF03553)ER
225849.swp_2172PF05887(mitochondrial)
225849.swp_2386(PF09317)ER
225849.swp_3513(PF01103)ER
225849.swp_0647(PF08329)ER
225849.swp_1292(PF00245)ER
225849.swp_4417(PF00849)mitochondrial
225849.swp_3648(PF03199) (PF03917)
225849.swp_1913(PF02371)
225849.swp_1911(PF02371)
225849.swp_1910(PF02371)
225849.swp_3370(PF02371)
225849.swp_3372(PF02371)
225849.swp_3422(PF09317)
225849.swp_3563(PF02371)
225849.swp_4034(PF01103)
225849.swp_0862(PF02371)
225849.swp_1929(PF00849)
225849.swp_3309(PF12392)
225849.swp_3435(PF02371)
225849.swp_3940(PF00849)
225849.swp_4223(PF02371)
225849.swp_4339(PF00849)
225849.swp_3844(PF00245)
225849.swp_4662(PF03553)
225849.swp_3865(PF00849)
225849.swp_4872(PF01103)
225849.swp_3055(PF00849)
225849.swp_4585(PF16983)
225849.swp_4276(PF12392)
225849.swp_4290(PF00849)
225849.swp_4126(PF00849)
225849.swp_2192(PF02371)
225849.swp_3066(PF14864)
225849.swp_4914(PF02371)
225849.swp_4916(PF02371)
225849.swp_1248(PF01103)
225849.swp_1245(PF01103)
225849.swp_1866(PF00849)
225849.swp_2442(PF02371)
225849.swp_3530(PF00849)
225849.swp_3829(PF08357)
225849.swp_3825(PF02371)
225849.swp_2473(PF02371)
225849.swp_1672(PF00849)
225849.swp_3023PF01536
225849.swp_0893(PF00849)
225849.swp_1294(PF00245)
225849.swp_3299(PF00849)
225849.swp_4410(PF03553)

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: YES (FDR = 0.5 %)
  • Functional Type III secretion system: NO (FDR = 12.5 %)
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: YES (FDR = 7.7 %)
    Estimated copy number = 0.875 (7/8 KEGG proteins)

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================