Effective results for Synechococcus sp. CB0101 (eggnog40)

Summary

Number of putative secreted proteins: 149
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 110 eukaryotic-like domains, contained in 149 proteins (18 high, 131 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
232348.SCB01_010100001439(PF16639) (PF01333)ER; (ER)
232348.SCB01_010100012847(PF12046)ER
232348.SCB01_010100012332(PF12095)(ER)
232348.SCB01_010100006701PF01744(ER); ER
232348.SCB01_010100007510(PF00685)mitochondrial
232348.SCB01_010100001731(PF00685)mitochondrial
232348.SCB01_010100001137(PF08417)(ER)
232348.SCB01_010100015106(PF04481)mitochondrial
232348.SCB01_010100007932(PF12452)(mitochondrial)
232348.SCB01_010100006758(PF11152)ER
232348.SCB01_010100001404(PF02507)ER
232348.SCB01_010100009719(PF10716)ER
232348.SCB01_010100015176(PF16166)ER
232348.SCB01_010100011212(PF13759)ER; (ER)
232348.SCB01_010100014639(PF01737)ER
232348.SCB01_010100009724(PF11460)ER
232348.SCB01_010100007917(PF05019)(mitochondrial)
232348.SCB01_010100005271PF00504ER
232348.SCB01_010100007375(PF10693)(ER)
232348.SCB01_010100013414(PF07444)ER
232348.SCB01_010100013259(PF01716)ER
232348.SCB01_010100002311(PF07444)ER
232348.SCB01_010100005069PF16709ER
232348.SCB01_010100000470PF01744(ER)
232348.SCB01_010100009524(PF00124)(mitochondrial)
232348.SCB01_010100011197(PF11805)ER
232348.SCB01_010100012267(PF06514)ER
232348.SCB01_010100008849(PF08332)ER
232348.SCB01_010100000857(PF01789)ER
232348.SCB01_010100008472(PF12437)mitochondrial; plastid
232348.SCB01_010100012697(PF11909)(mitochondrial)
232348.SCB01_010100005161(PF00124)mitochondrial
232348.SCB01_010100005581(PF13326)ER
232348.SCB01_010100007470(PF11264)(ER)
232348.SCB01_010100011429PF00504mitochondrial; not used
232348.SCB01_010100005616(PF11016)(ER)
232348.SCB01_010100000957(PF01169)(ER)
232348.SCB01_010100011439(PF04983) (PF00623)not used
232348.SCB01_010100007380(PF12159)(ER)
232348.SCB01_010100000570(PF06298)ER; not used
232348.SCB01_010100001197(PF13759)(ER)
232348.SCB01_010100003597(PF01947)(ER)
232348.SCB01_010100000345PF04098plastid
232348.SCB01_010100008107(PF01169)ER; not used
232348.SCB01_010100002306(PF06596)ER; not used
232348.SCB01_010100013860(PF00284) (PF00283)
232348.SCB01_010100013865(PF00283)(ER); not used
232348.SCB01_010100005436(PF04278)(ER)
232348.SCB01_010100012193(PF02427)
232348.SCB01_010100013624(PF09366)
232348.SCB01_010100013559(PF12600)
232348.SCB01_010100013554(PF02532)not used
232348.SCB01_010100001726(PF00685)
232348.SCB01_010100000145(PF02392)
232348.SCB01_010100011661(PF02672)
232348.SCB01_010100002638PF00504not used
232348.SCB01_010100014067(PF11623)
232348.SCB01_010100007460(PF10013)not used
232348.SCB01_010100001429(PF11267)
232348.SCB01_010100003802(PF00140)
232348.SCB01_010100011434(PF04983)
232348.SCB01_010100007490PF03742not used
232348.SCB01_010100005936(PF00124)
232348.SCB01_010100009144PF00504not used
232348.SCB01_010100010420(PF13355)
232348.SCB01_010100011062(PF02941)
232348.SCB01_010100011444(PF00623)
232348.SCB01_010100008092(PF05969)not used
232348.SCB01_010100012817(PF02531)
232348.SCB01_010100007135(PF12204)
232348.SCB01_010100005636(PF00140)
232348.SCB01_010100001409(PF01701)not used
232348.SCB01_010100009154PF00504
232348.SCB01_010100000045(PF03098)
232348.SCB01_010100004072(PF00140)
232348.SCB01_010100000025PF10712
232348.SCB01_010100002441(PF02943)
232348.SCB01_010100008719(PF02672)
232348.SCB01_010100007655(PF12437)
232348.SCB01_010100013170(PF09366)
232348.SCB01_010100012482(PF00796)not used
232348.SCB01_010100006743(PF03040)
232348.SCB01_010100002673(PF12899)
232348.SCB01_010100007003(PF09353)
232348.SCB01_010100009149PF00504
232348.SCB01_010100007732PF00504not used
232348.SCB01_010100012347(PF05421)
232348.SCB01_010100004879(PF00140)
232348.SCB01_010100005656(PF08854)
232348.SCB01_010100002860(PF10664)
232348.SCB01_010100002865(PF11371)
232348.SCB01_010100008287(PF11833)
232348.SCB01_010100012752(PF14159)
232348.SCB01_010100009379(PF13911)
232348.SCB01_010100013539(PF00737)
232348.SCB01_010100011646(PF10063)
232348.SCB01_010100012727(PF10999)
232348.SCB01_010100012432(PF11910)
232348.SCB01_010100013544(PF02468)not used
232348.SCB01_010100013085(PF00223)
232348.SCB01_010100005201(PF00140)
232348.SCB01_010100008102(PF01169)
232348.SCB01_010100011826(PF08853)
232348.SCB01_010100012702(PF12617)
232348.SCB01_010100008924(PF06799)
232348.SCB01_010100006286(PF11282)
232348.SCB01_010100006421(PF11347)not used
232348.SCB01_010100013090(PF00223)
232348.SCB01_010100013384(PF02245)
232348.SCB01_010100001242(PF14159)
232348.SCB01_010100010235(PF00124)
232348.SCB01_010100010230PF02005not used
232348.SCB01_010100010345(PF00140)
232348.SCB01_010100013664(PF02533)not used
232348.SCB01_010100008869PF16865
232348.SCB01_010100013289(PF04483)
232348.SCB01_010100005044(PF08847)
232348.SCB01_010100001272(PF02529)not used
232348.SCB01_010100010220(PF08041)not used
232348.SCB01_010100000050(PF03098)not used
232348.SCB01_010100008127(PF11210)
232348.SCB01_010100010827(PF08855)
232348.SCB01_010100004204PF04098
232348.SCB01_010100002326PF00504
232348.SCB01_010100002743(PF00124)
232348.SCB01_010100007085(PF11360)
232348.SCB01_010100011776(PF11317)
232348.SCB01_010100008272(PF12049)
232348.SCB01_010100013875(PF01788)
232348.SCB01_010100012477(PF02605)
232348.SCB01_010100013870PF02419not used
232348.SCB01_010100006201(PF11947)
232348.SCB01_010100013050(PF05151)not used
232348.SCB01_010100013299(PF02245)
232348.SCB01_010100001007(PF00140)
232348.SCB01_010100000732(PF10674)
232348.SCB01_010100007982(PF12527)
232348.SCB01_010100013599(PF11378)
232348.SCB01_010100006106(PF07082)
232348.SCB01_010100013930(PF00685)
232348.SCB01_010100014274(PF00140)
232348.SCB01_010100011374(PF11341)
232348.SCB01_010100008077(PF04483)
232348.SCB01_010100011152(PF04839)
232348.SCB01_010100012213(PF08332)
232348.SCB01_010100007445(PF05019)
232348.SCB01_010100013035(PF01405)not used
232348.SCB01_010100009804(PF00140)not used
232348.SCB01_010100013324(PF02245)

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: YES (FDR = 0.5 %)
  • Functional Type III secretion system: NO (FDR = 12.5 %)
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: NO (FDR = 7.7 %)

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================