Effective results for Deinococcus radiodurans R1 (eggnog40)

Summary

Number of putative secreted proteins: 18
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 13 eukaryotic-like domains, contained in 18 proteins (1 high, 17 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
243230.DR_1192(PF09949)(mitochondrial)
243230.DR_2035(PF09348)mitochondrial; (mitochondrial)
243230.DR_A0325(PF09113)ER
243230.DR_A0358(PF09949)ER
243230.DR_0423(PF04098)(mitochondrial)
243230.DR_1721(PF14022)
243230.DR_1533(PF02182)
243230.DR_A0249(PF01457)
243230.DR_2161(PF05706)
243230.DR_A0229(PF09348)
243230.DR_0697(PF01991)
243230.DR_A0230(PF09348)
243230.DR_0853(PF00025)
243230.DR_1237(PF09348)
243230.DR_0665(PF14022)
243230.DR_2262(PF14328)
243230.DR_0193(PF04930)
243230.DR_1624PF08152

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: YES (FDR = 0.5 %)
  • Functional Type III secretion system: NO (FDR = 12.5 %)
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: NO (FDR = 7.7 %)

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================