Effective results for Vibrio cholerae O1 biovar El Tor str. N16961 (eggnog40)

Summary

Number of putative secreted proteins: 16
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 12 eukaryotic-like domains, contained in 16 proteins (2 high, 14 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): Type VI

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
243277.VCA0148(PF10462)(mitochondrial); plastid
243277.VC1496(PF08180)ER
243277.VC1457PF01375ER
243277.VCA0443(PF08212)ER
243277.VCA0096(PF13582)ER
243277.VCA0317(PF08212)ER
243277.VCA0406(PF08212)ER
243277.VCA0350(PF08212)ER
243277.VC0820(PF10462)ER; (ER)
243277.VCA0027(PF02010)(ER)
243277.VC1301(PF01490)
243277.VC2608PF09496
243277.VC1389(PF10013)not used
243277.VC1773(PF07646)
243277.VC0838(PF00165)
243277.VCA0374(PF08847)

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: YES (FDR = 0.5 %)
  • Functional Type III secretion system: NO (FDR = 12.5 %)
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: YES (FDR = 7.7 %)
    Estimated copy number = 1.25 (10/8 KEGG proteins)

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
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