Effective results for Streptococcus mitis NCTC 12261 (eggnog40)

Summary

Number of putative secreted proteins: 62
- Predicted by T4SEpre: 66
- Predicted by EffectiveELD: 7 eukaryotic-like domains, contained in 12 proteins (4 high, 8 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): (Type IV)

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
246201.SM12261_1312+ER
246201.SM12261_1267(PF03083)ER
246201.SM12261_0792+ER
246201.SM12261_0712+ER
246201.SM12261_0177+ER
246201.SM12261_0386+(mitochondrial); (plastid)
246201.SM12261_1623+ER
246201.SM12261_0959+ER
246201.SM12261_0595+(mitochondrial)
246201.SM12261_0750+ER
246201.SM12261_0919PF04103ER
246201.SM12261_1371+ER
246201.SM12261_0002+mitochondrial; (mitochondrial)
246201.SM12261_0796+ER
246201.SM12261_0810(PF03083)(ER)
246201.SM12261_0988PF02916(ER)
246201.SM12261_0493+ER
246201.SM12261_0700+(ER)
246201.SM12261_1177+(mitochondrial)
246201.SM12261_0484+(mitochondrial)
246201.SM12261_0268+
246201.SM12261_1241+
246201.SM12261_0878+
246201.SM12261_1011+
246201.SM12261_0304PF00312
246201.SM12261_1272+
246201.SM12261_0849+
246201.SM12261_0206+
246201.SM12261_1548+
246201.SM12261_0986+
246201.SM12261_0506+
246201.SM12261_0358+
246201.SM12261_0883+
246201.SM12261_1614(PF04991)
246201.SM12261_1613(PF04991)
246201.SM12261_1051+
246201.SM12261_1432+
246201.SM12261_0522(PF03644)
246201.SM12261_1400+
246201.SM12261_1158+
246201.SM12261_0951(PF03596)
246201.SM12261_0775+
246201.SM12261_1091+
246201.SM12261_0942+
246201.SM12261_0945+
246201.SM12261_0388+
246201.SM12261_0769+
246201.SM12261_0619+
246201.SM12261_1393+
246201.SM12261_0323PF00312
246201.SM12261_0299(PF03596)
246201.SM12261_0108+
246201.SM12261_0566+
246201.SM12261_1195+
246201.SM12261_1346+
246201.SM12261_0123(PF04991)
246201.SM12261_1537+
246201.SM12261_0791+
246201.SM12261_0062+
246201.SM12261_0668+
246201.SM12261_1039+
246201.SM12261_0860+

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: NO (FDR = 0.5 %)
  • Functional Type III secretion system: N.D.
  • Functional Type IV secretion system: YES (FDR = 7.2 %)
    Estimated copy number = 0 (0/0 KEGG proteins)
  • Functional Type VI secretion system: N.D.

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================